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Mutant Lines
53-2042-1

53-2042-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24755964 [Map]; Strand: w
- AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: exon10 (CDS)
- AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: exon10 (CDS)

TTTGGAATCA TACTTCTTCA GCTAGTCACA GCTAGATCCG CGATGGGTTT 
GGCTCATTCG ATAGAGAAAG CGTTGAGAGA TCAAACCGGG AAATTTACAG 
AGATCTTGGA TAAAACTGCN TGGAGATTGG CCGGTTAAGG AAGCTAAAGA 
GATGGTTATG ATAGGGCTTA GATGTGCAGA GATGAGAAAG CGTGATCGTC 
CTGATTTAGG GAAAGAGATT TTGCCGGTTC TTGAACGGTT AAAGGAAGTT 
GCGTCTATCG CAAGGGACAT GTTTGCTGAT AACCTAATTG ATCATCACCA 
TAACGCTCCG ACCCATTTCT ACTGTCCAAT AACAAAGGTA ATGAATGATA 
CGAAAATCTT ACATTTTATG TCAGATTTTT GATACGTTAT GTGTTTTGAT 
TTGGTTTATG GGGTCATTGA TGAAATTAGG ATGTGATGGA GAATCCATGT 
GTTGCTTCGG ATGGATATAC GTATGAGAAG AGAGCGATTA AGGAATGGCT 
TCAGAAGAAT CATAAATCTC CAATGACGGA TTTGCCCTTT CCTAGTGATT 
CTCTTCTTCC TAATCATTCT CTTCTTTCTG CAATCAAGGA GTGGAGATCA 
CAACTAATTA AATAAATTAA TTAAAGGTTC TTAAATTTAT ACGGCTAAAT 
TCGTCAATTA ACATGAATCG NTGTGGNTTT TGTTTTGT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24755848 [Map]; Strand: w
  - AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
    Distance: 0; Region: exon10 (CDS)
  - AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
    Distance: 0; Region: exon10 (CDS)
Flanking Genome Sequence: 53-2042-1 - 3-prime edge
```
AATCGGACAC GTAGGATATC ACATTCGGGA GTTAACCACG CCGGTTCTTT 
GGTGGTCAGG ATCTATGTGA AAGANTGTTC CAACTGGACN GGTTTCGTTG 
AAAACCGTNG AGGCATGAGA AGGATCAAGA TTAACCATTT TGGAAAGGCC 
TACGTCTCTG CTACTCCT
```

AT5G61560.1

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61560.2

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
Link: InterPro Scan - TAIR