Home
Mutant Lines
53-2043-1

53-2043-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24350821 [Map]; Strand: w
- AT5G60570.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
  Distance: 704; Region: intergenic
- AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
  Distance: -3003; Region: intergenic

GGTATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCTGA CGCGTCGGAT CTGATGGATT AGATTTTCGC 
GTTTACACAT AGCTTGTAAG TATTTACAAA TTTCCAATTT GGTCATGTAG 
TCCCAAAGGG ACCAACCTAG TATTTGCAAT TTTGCATGCN GTGAAAGTTA 
CCATCAAATA TTATCTAGTG TCGTGAAAAT CTATGAAACA TATCCACTAT 
ATTTATGGAA ATCTGTAGTA GATTGTTTAA TTTTCATGTG TTTTTATTTT 
TTCTTAAAAA AATGCTTTAG AGCTGATGGA AACTATCACA AAACAATAAC 
TCATCCTATC TTAAAAAGTC TAAGCACTAA AATGCTACTG TAATAATTAT 
GGATAGTGCG ATAATGTTTA ATAAACGATC ATGTGACATA CTCTTCATTC 
TTCAAGAATG TAGTATAATT TAAGATTTTC CAAAACCCAC TTAGGTTATT 
GTTAATGTGC GTAGGCATTT AAGTCTACTT ATTCTAAAGA ATCTTCTAGT 
TGATTCTTTC TCCCTAACAA TGTGGGTCTT CGAGCTTGGC CTCTCATGTA 
TGGGTAAGTC GTACATAAGT GCAACACACA CACTTTATTT TGTATGGGTA 
AATTCATGAT TCATGTACCT GCCATAAGTG CAAAACTGTG TATGATTTAA 
GCCCTACATT ACCAGGAGGT GGCTTAAGTC AATATATGTA TCATATAGGA 
TTATGTGTGA TTTGACATAA TAGCAT

3 prime edge [+] show sequence

Chromosome: 5; Position: 24350813 [Map]; Strand: w
- AT5G60570.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
  Distance: 696; Region: intergenic
- AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
  Distance: -3011; Region: intergenic

TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAT 
TATCCTCTTT TTTTTTAGAT AGCTTACAAA GTCACAAGCC ATCTCTACTT 
GTGTCTTCTA GTATACCTGT CGAGTTTTTA AGTCCATATC CGATCAAAAG 
AGCCCGTTTT TAATAATGGG CTCTAAAAAT ATGAATAGCT ACAATATTTT 
TGTAGGTGTA GTAGTTGACT TGAGAGGCCT AATAACTGAA CAAGTACATT 
ATGTTTCCTT TTGTCGTTTA ACAATTTTTT TACATAGATA TCACTTTTCA 
AAGAAAACAA ACTAAAAATC ACGATTTCTG AAGTACTCCT TGTACCACAT 
TGCACTTAAA CCAAGATTCC AAATGTGTAC TGATGAGTGA TGACTGCAAA 
AATAAGGATC ACATGAATAC TTTATCAGCT CACTGAAATT TCAGACTATT 
TTGTAATACC TACTATTTGA AATAGATCGA GACTGTTTCT AATAAAAAAA 
TCTTGACTGC ATTAAATTCT CAAAAACAAA TTTATGATTT TGTTGTAAAA 
TACCACCAAA TGATCATAAA TTCCTAATTC ATAGTCTCCT CTTCCTCCGG 
CTTTGGGTCG TGTAGGACCA AGATTAGTCA TAGGATCTTG AACCTCCTTT 
AAAGCCCTCC TCCTATTGCT TTCACTTACG AAAATGACTT AAAACTAGTT 
TTCACTTTTC ACAACTACAA AAACGCACAT TTAGTATTTT CACTATTCAC 
AACAATACAA TTCTTCTCTT TT

AT5G60570.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G26930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR