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53-2070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2999608 [Map]; Strand: w
      • AT3G09770.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -1418; Region: intergenic
      • AT3G09780.1 - [+] show detail - CRINKLY4 related 1
        Distance: 1151; Region: intergenic
    Flanking Genome Sequence: 53-2070-1 - 5-prime edge 
    TACCTAACCA CTCGCACACA CTTTCATTAA GCAATTCCAA AAGACGAACA 
    TATATAAACT AAGAAAAATA AATGGGAATC AATTATAAAA TACTCTATAT 
    ATAGTGGGAA ACGGCAGACC GGATATATCA TCAAGTTGGA TACATATGTT 
    GTGTAAAATC TGTAAAATCA ATTGTATCAA TTTATAGTTA TGTAGACCTA 
    TGATCGTGAC ATATATATAT ATATATATAT ATATATATAT ATATATATAT 
    ANANATATAT ATNTNTNTAT ANNNAANANN ANNTNTNTNC TCTNGNGNGT 
    GGGGNNATCT TNTNTNTNTN CGCNCNGCGC GCANATATAT NNCNCGGGNG 
    GGNGNNNNNN TNGCGNNNNA GAGTGNTATA TATNTNTCAC ANANATNTTN 
    NTGTGTGNGT CTCTNTNTNN GNNAGAGAGA GAGNGCGCGN GNGNNANAAA 
    AAANANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2999492 [Map]; Strand: w
      • AT3G09770.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -1302; Region: intergenic
      • AT3G09780.1 - [+] show detail - CRINKLY4 related 1
        Distance: 1267; Region: intergenic
    Flanking Genome Sequence: 53-2070-1 - 3-prime edge 
    GTTAGGTATG CGATTCTATT ATGTCTCTTT ATTTATTTTT GATTTCGAAT 
    CGCACCACTA CCTTCGTATG GGAATGTTTC AATATGATAT CTATCTGTAT 
    ATGATCACGA ATATAATTTG ATTTTGATCA AAATCAACAT GTAATATAAT 
    TTCACNGTAA TATCAAACAT CCAATAGTTA CAGTTTAATC TGGCTACTGA 
    ATATATATAT ATATCTTCCT TTGAAAGAAT GTTTATATAT TTTTATTCTT 
    TGTGACGTTT TTTTTAGCTA ATGGTGATCT CTTGACTCTA AATTCATACA 
    AATTTTTTAA AAAATTAGCT TAGGGTTTTG AAAATATAAA AACTCTTTTA 
    GGGCTTATGT TTTCTTTTTG GTCAACGGAG CTTATGCTTT TGTAGAAACA 
    CTAATTTTTA AGACATTAAA GTATACATCA GTTTTGTTTT GTGTTTTGGG 
    TTAAACTTAT ACACAATTAT TCAAAGACGA CAAAACAAGT TTAAATATGA 
    ATT

AT3G09770.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03200.1); Has 7619 Blast hits to 4715 proteins in 450 species: Archae - 8; Bacteria - 442; Metazoa - 2165; Fungi - 884; Plants - 2938; Viruses - 368; Other Eukaryotes - 814 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09780.1

Model type
Protein coding
Short Description
CRINKLY4 related 1
Computational Description
CRINKLY4 related 1 (CCR1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TNFR/CD27/30/40/95 cysteine-rich region (InterPro:IPR001368), Protein kinase, ATP binding site (InterPro:IPR017441), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 2 (TAIR:AT2G39180.1); Has 92283 Blast hits to 90862 proteins in 3897 species: Archae - 88; Bacteria - 8648; Metazoa - 34704; Fungi - 6843; Plants - 29398; Viruses - 212; Other Eukaryotes - 12390 (source: NCBI BLink).
Link
InterPro Scan - TAIR