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53-2077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18173316 [Map]; Strand: c
      • AT4G39000.1 - [+] show detail - glycosyl hydrolase 9B17
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2077-1 - 5-prime edge 
    CGTCTAAACT CTNNACCCGT CGTCGTTTTA TTTAGTGTAA TCGTGCATTT 
    GGTTTTCACC ATCTATGGAC ACAATAGTTA TAGTAAAAAA TATATATTTT 
    GTATATTCAC CAATACATAG CGTTATCAAG AATTTGTTTT CACCAATTTT 
    GTCATAATAA GACAGGAATC AAATTGGATA TCTTCCCTGA CAAGATAATC 
    AATATGTGTT GATTAGTTTC TTCTTCTGTA ATTATTCTTC TCNCTCAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18173428 [Map]; Strand: c
      • AT4G39000.1 - [+] show detail - glycosyl hydrolase 9B17
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2077-1 - 3-prime edge 
    TTTAGACGTA CGTGGACNAA AATGCGATTA NGGAGTTGTG AAACGGTCTT 
    AAGGAGATAA TCAGTGGCCC ACTTGAGGGC TACGAGATTA TGTCTGAAAT 
    CATGCTGAGA CATATAGCGT CCGAAGTCAA CAGAACTCCA AGCAAGCATC 
    GTGGCCGTAA AAGCCATCGG AAAATGAAAC TTAACGTTGT CCCCGGCGTC 
    GTAGTAACCA CCAACGAGGT CGGTTTTGAG GTTTTTTCCG TCGTTGAGTG 
    CAGAGTTTCT ACGCCACGCC ATCCTTTGTT GTTTTGGAAG ACGACCANAG 
    CGTTGACCTT CGAAAAAGAG GATTGACTTT CTAAGAGCAT CGGAGTAGTC 
    GTGAGGGATC GC

AT4G39000.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B17
Computational Description
glycosyl hydrolase 9B17 (GH9B17); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B18 (TAIR:AT4G39010.1); Has 1741 Blast hits to 1731 proteins in 246 species: Archae - 2; Bacteria - 582; Metazoa - 188; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR