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53-2082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 475837 [Map]; Strand: w
      • AT4G01090.1 - [+] show detail - Protein of unknown function (DUF3133)
        Distance: -2045; Region: intergenic
      • AT4G01100.2 - [+] show detail - adenine nucleotide transporter 1
        Distance: -1304; Region: intergenic
    Flanking Genome Sequence: 53-2082-1 - 5-prime edge 
    TGTATGAGTA ATGAGCTGGT GAACTGTTTN ATGTGTGATC TACAGGAATT 
    ATCACATAGA ATAATAGCCA TAAGGCTTTC GGTATTTGAT TCTTATCACT 
    CGACNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 199811 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 1232; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -2605; Region: intergenic
    Flanking Genome Sequence: 53-2082-1 - 3-prime edge 
    TTTAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAAGAG 
    AGCACACGTA GAGAGTTCAT CACCAATATT GTTAATGTAA GCCGTTTTGA 
    AAGGCACAAA AACTAAATCT CCAAATATGT AATATTTTGG ACGGTTGTAA 
    TATATTTTCA CCTTGATATG TAGTGTCACC TTGATAGGGT CGGTTGACAC 
    CCTCATGTAG CAGAGAGACC TTTGCCTAAT GTTCCAGAGA TTGAGAATGC 
    TATTGTTTGT TTGTTTATTG GTAATTGTGT TGAGATAGTT TTGCCTTACC 
    GGACGAAGAC CTCTCCTGTC AAATCGCCGG ACGAGCTCCA TTTTCGTAAA 
    GACCGTTGTT GTAATATTTT TGTAAATGAG AGACTTTCTC TCATTTTTTG 
    AGAAATGTTC ATGATAAATT TGTTATTTAT TATTATATTT TTATTTTTGA 
    AAATGAAAGA CTATGGTGAA AGACCACCAT TGCAGATTGC TCTTAGATAA 
    AGATTAGTAT CAATACTTAT CCCAACATTT TCTATGGCAA TGTTGTCAAT 
    TGCAAGCATT ATGTCAAAAG GGCACATAAT CTTGTGAGCA CTTGAGAGAG 
    AGTTGATTCT CTTGATTTCT ACTCTTGTCA TTTAAGGGAC CACCCTTGGA 
    CAAGTTATGA ACATCTATGT TTAATATAAC TTCAAACATC AAGCCCAATG 
    AACTCAAGGA AAGAAGAAAT AAACTGCATC ACAACGCATG TTTGGAATTA 
    CAGAGGTGCA CAAGACCACA

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01090.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3133)
Computational Description
Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT1G01440.1); Has 1545 Blast hits to 1451 proteins in 231 species: Archae - 0; Bacteria - 62; Metazoa - 476; Fungi - 316; Plants - 452; Viruses - 2; Other Eukaryotes - 237 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01100.2

Model type
Protein coding
Short Description
adenine nucleotide transporter 1
Computational Description
adenine nucleotide transporter 1 (ADNT1); CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G51050.1).
Link
InterPro Scan - TAIR