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53-2103-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24757156 [Map]; Strand: c
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 438; Region: intergenic
      • AT5G61570.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1191; Region: intergenic
    Flanking Genome Sequence: 53-2103-1 - 5-prime edge 
    GAATCAGGTA TATAAGTGCN TGANNNAANG TNTGANNAAT GCGNACATGT 
    NATTTTNGTA AATTCAGTAT TCGTTTGGCT AGCCCATTTA TTATTCTATA 
    ACCATATTTA TGTCTTTCAT AGCTATATCA TATAGAACCC ACACAATTTA 
    ATGGCCTAGG TGTCAGATCT CATCTCATGT ATACTANGTT ACTAACCTAG 
    TTAACAATTG CATATATTCA ACAAAATCCA ACATGACAAA ACATACCATT 
    TTAATATTTT AGACTTTTTT CACTAAGAAA CCGATAGATG T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24757272 [Map]; Strand: c
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 554; Region: intergenic
      • AT5G61570.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1075; Region: intergenic
    Flanking Genome Sequence: 53-2103-1 - 3-prime edge 
    CCTGGAATGA TAGAGTTTTC TTTTTCCTTT ATCCTTTTTT CATATAGTAT 
    TAGTTACAAA CGAAGAAACT TTAACAAAGG TAAACAAATA TACGTTAATA 
    AGTTCGAACT ATACGTCAAT TATGAATTAT GTCTAAACCA AACGATGTTC 
    AAAACATAGA AGTAATAAGA ATTACATTAT AACAACAAAC AGTATATGTA 
    ACTATGTAAG AGAATCATTG CAATAATTTA TATTCTATAT GTCGTTTAGT 
    TTGCACACAT GCACACATAG GGAAAAAGAA CTTTATCCTA ATATGAAGTG 
    ATTAAATATC AGAATGGAAA TTATGCAATA CAAATAGAAA AATAAAACAA 
    CAAAGTAAAA AATCTCTAAA AAAATTTAGT AAACAAAAGT TGCAATTGAG 
    TTGTGGTTGT

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61570.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G07620.1); Has 83143 Blast hits to 82386 proteins in 2669 species: Archae - 65; Bacteria - 8087; Metazoa - 31019; Fungi - 5483; Plants - 27570; Viruses - 202; Other Eukaryotes - 10717 (source: NCBI BLink).
Link
InterPro Scan - TAIR