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53-2107-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3857826 [Map]; Strand: w
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 843; Region: intergenic
      • AT5G11960.1 - [+] show detail - Protein of unknown function (DUF803)
        Distance: 753; Region: intergenic
    Flanking Genome Sequence: 53-2107-1 - 5-prime edge 
    AACTTTAAGA ACTGGTTTGG AAGGATTTCA AATCATAATA TCTTCTGTGT 
    TTTGGTACAA TCAGTTGAAG TACCTCGAAT CATAAAAATC TTGAAACATT 
    ATCATTTACT AGTCACACTT GCGTTAAGGG ACCAAGAAAA GCTGAATTGG 
    GGTGTGGGGT TTGGGACCCT TGAAGGGAAA AAAAGAAAGA AAAGGAGATG 
    GTAAAATACT AAAATAGTAA AATGTGAAAG TGTCACTTCA TTGTCAAACA 
    TACTTGTCTC CTTCAGTTTT GATGTATGTC CTGATTTGGT ACCAATATAG 
    GTTAAGCCCC AACCTAATTG TAGTTGATGT TTGTATCTCT TGCATTATGT 
    GCATCTCACT TTCTTCCATC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3857710 [Map]; Strand: w
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 727; Region: intergenic
      • AT5G11960.1 - [+] show detail - Protein of unknown function (DUF803)
        Distance: 869; Region: intergenic
    Flanking Genome Sequence: 53-2107-1 - 3-prime edge 
    TTAAAGTTGA TAGAGATTCT CCTTGACAAA GAATACAACG AAGTTCGAAG 
    TAGAGTTTTA GAACCCATAT GTGCGAGATT TAAACATATA ATCGACTAAC 
    TGAGGCTGGA CTACATACAA TGTTCAAACA AGTACACACT ATTTAAAATA 
    TATTTGATAG GTATGCAATT TGAATGCAAA TTTTGAAGCT ACTATTAGTG 
    TTTTGCGGTA CGTTGTCGAT AACATCACAT GAGAGAAATA TTTTACTCTC 
    TTCTAGCGGA TTTCTGTCAT TATCTATTTA AATAGTGGTA AAGAATCAAA 
    CTTTGACCGA ATCTCTAATA AAACTTTAGT TACCATCTAA AAACACGTTC 
    GAAAATCATC TTTTATTACC ATGAAGGTCA TCATCATCAC CTTTAAACTA 
    GTCAATGACC TAATC

AT5G11950.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4835 Blast hits to 4834 proteins in 1455 species: Archae - 28; Bacteria - 3320; Metazoa - 8; Fungi - 132; Plants - 375; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11960.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF803)
Computational Description
Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR