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53-2156-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23398572 [Map]; Strand: c
      • AT3G63340.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -195; Region: promoter
      • AT3G63340.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -195; Region: promoter
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: -896; Region: promoter
    Flanking Genome Sequence: 53-2156-1 - 5-prime edge 
    CCTCNCNATG CAAACTCTTT GGATTATGCT GTATTATCAT GTTATTGTTA 
    GGAGAAGAAC AAGTACTACA AACCGCAACA GAACATTCCA AGCCTCATCA 
    CACTAGTCAT CCAATTTGGT AACAAACTTA CTGCCACGTA GTCCTAGTGG 
    GCTGGGCTTT TAAAGAGGCC TTTTCCCCTT CGATCATATT TACTAAACCC 
    GAAATTAAAA GGCCCAAAAG GAACCCTTTG GATGAAGTCA AAGGTTCTCG 
    ACTTCTTTCT TCTTCCTCTT CTTCTTCGTT TTCAGGCNGG TGGAGGAGCT 
    CANANCCTTC CAGAGGTAAC CAACCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23398692 [Map]; Strand: c
      • AT3G63340.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -315; Region: promoter
      • AT3G63340.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -315; Region: promoter
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: -776; Region: promoter
    Flanking Genome Sequence: 53-2156-1 - 3-prime edge 
    NAGGTGTAAA GCGGCNACAT GGNGACCATG TTCGNAAGCA CACTCCACGN 
    GACAGGCAGG NTACGANGTG GCAATTTTGG ACCTTTTGTG ANGTGTTAAC 
    TTAACTTCNT TCCCACATCC GAAAGGAAAC TTGTGGAATC TACTCCTTCT 
    TGGAAAAATC CAAATGTGCC GATCANNTGT GTGTATATCG TCTTTTCTAT 
    TTACCAAGAC CTCAAAGCTA CTACTATTTC TTTTCTTCTT TTTTTTACCT 
    TTGTAGCTAG TTTTACTCGT CAGTCGTCAC TTTACTACAT TAAAGCTATC 
    CGATNGATGC CACGTATTCC CGACCGGTCC GGTGAGGTGG TCAACTTTTT 
    GTATNCCTGG TTTCAATATA TATTACTTCG ATATGTAAAT CATGGGATCC 
    ACCCCATACN ATTTTNCCTT AATCTCCTCN AAAGTATAAT CTACCCCCA

AT3G63340.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63340.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1).
Link
InterPro Scan - TAIR

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR