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53-2172-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19493065 [Map]; Strand: c
      • AT2G47500.1 - [+] show detail - P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calpon...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2172-1 - 5-prime edge 
    CAGAGAGATA TATGAGAAAC GGTAGAACAA ACAAAAAAAA AGAGGATTTG 
    GGAGATTTCT TCTCTGTTTT TTTTGGTTAA CAAGTTTGGG GATAGATTTA 
    AAAGGTAATG AGAGATTTAA TTANAAAANA AAAAAAGTTG ANAACTCATA 
    ANCTCCATGA ATGGTCTCAC AAATNCAAGG TTGTAAAGCT ATAACTGCTT 
    TATACTCTGT NGTCCTCTTC ACTCTTTCTC CTTCTCTCTA TTCTTTCCNA 
    ACCTCTTGCT TCGTTTCTTT TTTCCCTCCC TAACCAAACC TTATAATTCT 
    TTATAATTCT TTTTTCACNA TCACNCNANA ATCTTTTTCG GTTANCCTNT 
    ACCGTTNGGA TTTTATTAAA AACCTTACTA TTTATATCTC TCTATTTAAG 
    TTNGTTACCA TTTACTATTG TTGCTTATAT TGGATTATAT ATCACTCATC 
    AATGATATTT GTTCCTAATA TATTATTACT ANATCTANAT GATACTACTG 
    ATGTTTCATT ATTACTAGTN TCATTTTTAA TTGAATCCAA NATCATTGTA 
    TACTTTTCTT GGAAAATGGT CAGATTTTCC GTTTCAATAA AACTTAGTGG 
    GATCGGGTTT TGGTTTATTT TAGTAACCAT GGAAATCNGA ATGNGATTAT 
    TAATACTAGT NTTGGGAATA CTCCAAANGG ATTTTTTCTA TATAANATCN 
    AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19493181 [Map]; Strand: c
      • AT2G47500.1 - [+] show detail - P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calpon...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2172-1 - 3-prime edge 
    TCTCTCTGTC TCCGATCTTA TTTGGATCGG ACTAGTGTCA TTGGCAGTGA 
    AGTTTCATTG ACTTTGGGGT TTTCGCTTTT GATGCTGTGA GCTTATTATT 
    ATTGTTATTA CGGAGTTGAT GGCGGCTACT GCGACGGAGG ATGGAGGATT 
    AAGCTTCACT GTGGCTTCAG TAATGGAGGA TGTGTTGCAG CAACATGGAA 
    ATGGGCTTAG AGATCATGAT TTAGTGTCTC GTCGAGCTGA AGAAGCTGGT 
    CTCTATTCTT TTTATTTTTT TTTCGTGAAT TGTGTATANC TGATAGTTGA 
    GCATCCATGA TCTATAACAC ANA

AT2G47500.1

Model type
Protein coding
Short Description
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Computational Description
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11938 Blast hits to 11443 proteins in 432 species: Archae - 0; Bacteria - 1; Metazoa - 5987; Fungi - 1397; Plants - 1883; Viruses - 0; Other Eukaryotes - 2670 (source: NCBI BLink).
Link
InterPro Scan - TAIR