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53-2177-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9074893 [Map]; Strand: w
      • AT1G26230.1 - [+] show detail - TCP-1/cpn60 chaperonin family protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G26230.2 - [+] show detail - TCP-1/cpn60 chaperonin family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2177-1 - 5-prime edge 
    GGTTAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCATAA GGTACGTAAG TGAGAAACCT CTTTAAGAAC 
    AGTTTCACCG TCATTGACAA TCCTAGGAGG CCCGTACTTG TTCTGCAACA 
    CCACGTTTCG TCCCTTTGGA CCTAACGTCA CGCCTAATAG TTTAGCCACC 
    ATATCTGCAC CTGCCTTCAC CACCATTATC CATCATAAGA AAACGAAATT 
    CTATAAAAGT GCCCGAAAGA AGAACGAGAA AACCTGAAGC TN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9074841 [Map]; Strand: w
      • AT1G26230.1 - [+] show detail - TCP-1/cpn60 chaperonin family protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G26230.2 - [+] show detail - TCP-1/cpn60 chaperonin family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2177-1 - 3-prime edge 
    GCTTTTATTG CGACACGCTT CTGTGATGAT GCTTAAAGAA ATACCAAAAT 
    CATTATCATT TTTTATTGTG TGGTGTAGAT TGAATTGGAG GACCCGTTAG 
    AGAATGTTGG AGTGAAACTT GTGAGGCAAG CGGGTGCTAA NACTAATGAC 
    CTTGCCGGTG ATGGTTCCAC TACNTCTATA ATTCTTGCTC ATGGCCTTAT 
    TACTGAAGGT ATTAAGGTAT ACAGATTCCC ATTANGACCA ATTGGATAAT 
    GCATCACCAT ATGTGCTTTC TACTTGTGAA TTAACCCATT TTTCTCATCT 
    TCAGGTGATT

AT1G26230.1

Model type
Protein coding
Short Description
TCP-1/cpn60 chaperonin family protein
Computational Description
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34077 Blast hits to 34022 proteins in 8740 species: Archae - 776; Bacteria - 21861; Metazoa - 1711; Fungi - 1609; Plants - 849; Viruses - 2; Other Eukaryotes - 7269 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26230.2

Model type
Protein coding
Short Description
TCP-1/cpn60 chaperonin family protein
Computational Description
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2).
Link
InterPro Scan - TAIR