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53-2266-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 254115 [Map]; Strand: w
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-2266-1 - 5-prime edge 
    GTGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAC AGACATGTGG TGGAGTTTAT GAGAGGGAGA 
    TGGCATTTTA TGAACAAGCC GATACTTGTG GTGATTGATC CACAAGGCAA 
    CGAGGCTAGC CTTAATGCGC TTCATATGAT CTGGATTTGG GGCACTGAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 254112 [Map]; Strand: w
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-2266-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGTA 
    ACTCTATCAG CTTCGGGCTA TCCACTGAAT ACCTGACCCC CACAAAAAAA 
    AATAACTTCC AATTATATTT CTCCATCTTT CTTTACAACT ACTANAATGT 
    GTGTTTTGAA ATAAATGTGT TANATACCAT GGCATAGGGT CACGGAGATC 
    CTCAAATTTC TTCTGTAAAA TCGGAGATCT TTCAAAATCT TCAATAGGAT 
    C

AT3G01680.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR