1. Home
  2. Mutant Lines
  3. 53-2276-1

53-2276-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22335751 [Map]; Strand: c
      • AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
        Distance: -3938; Region: intergenic
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -1950; Region: intergenic
    Flanking Genome Sequence: 53-2276-1 - 5-prime edge 
    TAGGCTGATG ATCCCCACTA TGCAGAATTC CAGAAATTGC GAGAGAAAGA 
    CCGTAAATAA AGAAATTAAA TCGTTGCATT CACATAAATA AGAACAAAAT 
    AAACAGAAAT CGTTCATACA TATCCCATAT CGATAAGATA TGTAGTATCA 
    AGATACTTAA TTAAAAAAAA TAAAAGTTAC ATAATCGGAT AAGTCAATAC 
    TATTGCAATT TACAAATATA TGTTAGTTTA ATATTTTTCT CTTAGAATCC 
    TACTATATTA TTTGGGAAGT ACATTTTAAA TGTAACCTTA TTTTTTGTAA 
    GTAATTACAT AGGTATGCCA TTAGAAATAA AATTTAAATA GTAAATTAAT 
    TCATCTCTTT AAAAATTAAA AAGTCAAATA CTAATTTAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22335883 [Map]; Strand: c
      • AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
        Distance: -4070; Region: intergenic
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -1818; Region: intergenic
    Flanking Genome Sequence: 53-2276-1 - 3-prime edge 
    GGTTACAAAC TGGCAGTGAC CACCTACAAC TATTAAAGAG ACTTCATTCA 
    ATTCTACAAT ATTCTAGTTA AACTAAAAGT TTGCTTCACA TTGTAACAGA 
    CATAAATCCC CAAAATTATG GGCCTACAAT TTGCAATAAC TTGTTTATAT 
    TGCACTTCTG TTTTTTTTTG TTTATGGTAT AAGAGTTAAT CATTNGGNCA 
    ACTTCTTAAT NGTATGNGTT NGNNCATTGA TCTACTTGTA ATTCTTAGCT 
    TATTAATTAT TATATGGGGA TGTNGGCCCA ATTTCATCAT GGATAGAATT 
    TAACCTCCAC TTTTTCAACT NTAACATCAG TTNTAAATNG ACTTAANAAT 
    TAACTACGTC ACTTTCCAAA AATATTTTTC AAAACTCAAC GCAAAACACA 
    TCNTACAAAT TAGAC

AT5G55040.1

Model type
Protein coding
Short Description
DNA-binding bromodomain-containing protein
Computational Description
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55050.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR