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53-2278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24069689 [Map]; Strand: c
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: 3535; Region: intergenic
      • AT5G59740.1 - [+] show detail - UDP-N-acetylglucosamine (UAA) transporter family
        Distance: 362; Region: intergenic
    Flanking Genome Sequence: 53-2278-1 - 5-prime edge 
    CTTCCAACAG CAAGACTTTC CCTTTTAATC ACTTTTTTCT TGTTTACTTT 
    AAAATCTACC AATTTTGTAT TTCTAGTATT TTAATATTCT TTAAGAAATT 
    TTAAATTCTA AATGTATATA GCAGTATCAA AATGTACCTG GTCATCATCA 
    GAAGAATAAT TCAAAGAAGA AAAGAGATTG ATCTTGTTAA AGGTCTTGTC 
    TTTCATTTTT TTTTAAAATG GNGATGAGTA TCAGTCTTTT ATCTATAGGG 
    GACTTATTCT TCATTCCTAA AACATACTTG AATACTTCAA ACGAAGAGAT 
    ATGTAACCCT AAAGAAACTT TCATTAAGTT TCAAAAAATA ATAATTNGGT 
    TGTTAAGGGT AATCATTGAA TTGTTAGCTG ATTAACTCTG CATATACAAA 
    GATTATAACT TTCTGCCGGA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172938 [Map]; Strand: c
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2278-1 - 3-prime edge 
    GCCACGGAGG TGTATAAGGA GATGTTACNG TCGCGGGTTT CTCCGAATTG 
    TCACACTTAT ACTGTCTTGA TGGAGTATCT NGTCTGCCAC AGGTCATCAT 
    TCATTCTCTT GCACACCAAG TGTTTGTTAA AATGTCTAGC TGAAAGTCCA 
    CAACGTTTGC TTTATGTAGA TGAATCTGGT ATCTGAATGT TTTGTAGCCT 
    TGTTGGTGAT GATGTGTTAG GNTCTTCGTT TGATTTTGCA GGAAAATGTG 
    AGGAAGCCTT AGACATATTC TTTAAAATGC AAGAAATTGG TGTGCAGCCA 
    GATAAAGCAG CTTGCAATAT TCTGATAGCG AAAGCTTGTA AATTTGGGGG 
    AAACATCTTT CATGGCTCGA ATTCTTGTGT ACATGAAAGA AAATGGAGTT 
    GTCCTTCGTT ATCC

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59732.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59730
Link
InterPro Scan - TAIR

AT5G59740.1

Model type
Protein coding
Short Description
UDP-N-acetylglucosamine (UAA) transporter family
Computational Description
UDP-N-acetylglucosamine (UAA) transporter family; FUNCTIONS IN: galactose transmembrane transporter activity; INVOLVED IN: transmembrane transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 5 (TAIR:AT3G46180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR