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53-2305-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051716 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2305-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATCCCTACT CAGAACCTTC CTGTGACGCT TGGCTCCTCC 
    TTTACCCAAA CCTTTTCCTC CCTTTCCACG ACCCGACATT TTTTCAGCGA 
    AGATTCAGTT TTTCTCGAGA GAAATTGATG TTAGTAGAAG AAGAAGAACG 
    GTTCAGAGTA GATTTGGGTG AGAAAGATGT GAAATTGTTT TTATAGGCAA 
    AGACGGAGAG TCTATTTTTT GAGCAATCAG ATCGCATAAT AGATCTAACG 
    GCTGAGATAT CGATCCGTGT GTACAATAAA ATGATGTATA AACCGTCGAT 
    CTGTTTTAAT CGACGGTTCA TATTAGTGAT CCGCGTGATG GCAGTGATAG 
    CCACTAAGAA TCGTCTTTTG TTTTACATGT GGCGCCACAA ATTAGGGTAA 
    TGAAGCGGCA ATATTTTGGA ACTCGGAAAA TAAAATTGCG CCATCACATT 
    ATTTGAAAAT TTTCACATGC TTTTATTTTA AAAACCCACG AATTACAAGT 
    TACAACCGAA AAAGATTTAT AACATAGTGA TTTATACTAA TTTTGTAGTA 
    GCTTAATGTA TATTGATACT GGAAAAACAA TGACAATCAT ATGTTAGTAT 
    TATCAAGTTA TCGTATTGAT ATTGATATTG GAACATACAA TGGGTATTGC 
    CTTCTTTCGA CCATAAATAT CACCAAATTT ACAAAGTTTG TGTATACCAA 
    GTTATCAATT GGTAATGGGG ATGTCAACAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051764 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2305-1 - 3-prime edge 
    GTTCTGAGAG ACAACATCCA AGGAATCACC AAGCCTGCGA TCCGAAGNTT 
    GGCTCGTAGA GGTGGAGTCA AGCAGTATCA GTGGTTTGAT TTACGAAGAG 
    ACTCGTGGCA GTTCTCAAGA TCTTTCTCGA GAACGTGATT CGTGATGCTG 
    TCACTTACAC CGAGCACGCT AGGAGGAAAA CTGTGACCGC CATGGATGTT 
    GTCTACGCTC TCAAGAGGCA AGGAAGGACT CTTTACGGAT TCGGTGGTTA 
    ATTAGAGTTT TTCAGATCCG CGTTTGTGTT TTCTGGGTTT CTCACTTAAG 
    CGTCTGCGTT TTACTTTTGT ATTGGGTTTG GCGTTTAGTA GTTTTGCGGT 
    AGCGTTCTTG TTATGT

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR