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53-2329-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 201652 [Map]; Strand: c
      • AT3G01510.1 - [+] show detail - like SEX4 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2329-1 - 5-prime edge 
    TACACACACN TTCTCGGANA ANTCTCTNTT GGCTCGGTTT AATGGCGTTT 
    CTTCAACAAA TCTCCGGTTT AGGAGCTCTC GAACGNTCTT GTCCGTCAAT 
    TATAATCGGA TCTTCATTCC GGAGCGGTAA TGGCCGTGTA TTCGACGGAA 
    GAGGAATTGC GTACTTGGGT TCGAGGGAAA AGTTCGGATT CAACAGACGA 
    AGAAGAGTCG TTCTTAGAGT TGTTGCGATG TCGTCTTCTT CTACTCCGTT 
    CAAAATGAAT TTGAATGAGT ATATGGTCAC TCTCGAGAAG CCCCTCGGGA 
    TTCGCTTCGC ACTTTCAGCA GATGGCAAGA TCTTCGTCCA CGCCATCAAA 
    AAAGGGGTAT TCTCCGATCC TTAGAATGTC ATGTGGAAGT AGTAGTAATC 
    TCAGGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 201771 [Map]; Strand: c
      • AT3G01510.1 - [+] show detail - like SEX4 1
        Distance: -29; Region: promoter
    Flanking Genome Sequence: 53-2329-1 - 3-prime edge 
    AAGTATGGAA NNNGTTGGAN CTGTGANCAG ANAACGANGC GGCAGANGAN 
    GGTAAGANAG ANATTAGTGG TCCACGTGTC TTCACGTAGG TCCCGCTTTC 
    TCGTGGAAGT ATCTAATTTC CTTTTTATCA ACACATGACA CGTGTCTTTT 
    CCTCTCAGGT GAGAAAAAAA AAAAGGGAAA ANAAAAATNT CAANCGTNCC 
    TTTGAG

AT3G01510.1

Model type
Protein coding
Short Description
like SEX4 1
Curator Summary
Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.
Computational Description
like SEX4 1 (LSF1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: starch catabolic process; LOCATED IN: starch grain, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.1); Has 834 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 61; Plants - 322; Viruses - 12; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR