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53-2345-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 713352 [Map]; Strand: w
      • AT2G02610.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 533; Region: intergenic
      • AT2G02620.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -3904; Region: intergenic
    2. Chromosome: 5; Position: 16970638 [Map]; Strand: w
      • AT5G42420.2 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 208; Region: intergenic
      • AT5G42430.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 674; Region: intergenic
    Flanking Genome Sequence: 53-2345-1 - 5-prime edge 
    GATGCACAAA CAGGAGACAA GTTATATCAA ATGCTAAGGT GAGATATTCT 
    GTGGAAAATT TTACGGAAAA ATTGTTATTT AATACCTGAA CTTTCAAAAA 
    GTGGCCAAAT TAACCGTAAA CTCTTGAAAT GGCCGTTTTA TACCTTAACA 
    AAAAGTTGAC TTCTAATTTA ACCTATAAGT TATCGTGGGT TCGGCCAAAT 
    CGACTCACCG TTAACACTTC TTAACAGCTC TCCTAACAAT GTAACTAACA 
    ATTGTTTTCG TCTTTAAACC AACGCTAACG GCTGTTAGGC CATGTTTTGT 
    AACGGCTGTT AGGAGCGCTG TTAAGGAGTG TTAACGTTGA GTCGATTTGG 
    CCGGGTCAAT GATATATTAT AGATTAAATT AGAAGTCAAC GATNAATTAT 
    NAATTAAATT AGAAGTCNNT TNTTTGTTGA GGTATAAAAC GACCATTTCA 
    ATNGTNCACA GNNNATNNAN CCACTTTTTT AAAATNCNNG NNTTCNNTNN 
    CNTTNNTTCC NATNNNANNT NTNTNNNACT NACTNGNNNN TNNGATCCNN 
    NNNNNGCCCN CNCNGNCCNN NNTNTNNGCT NGNNANCNNC NNNNNANTGA 
    CNNNNNTNCC CTNNNNNNNN NANNNGNNNN NNNNACNNNN CCNNANNNNN 
    TNNNCCTNGN NTNGNTNNNN NTNCNNNNGN TNTNTTNCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24147868 [Map]; Strand: w
      • AT5G59980.1 - [+] show detail - Polymerase/histidinol phosphatase-like
        Distance: 0; Region: intron2 (CDS)
      • AT5G59980.2 - [+] show detail - Polymerase/histidinol phosphatase-like
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2345-1 - 3-prime edge 
    TGCATCCATA AGGAGATCGG AGTACATCCC TCGCTAATTC ATCAAGGTGA 
    AGCAAATAAA AAGTCATAGA TAACACACAG ATTCTTCTAA GAGTAAAACA 
    ATGTTTAATC TTAGATTCTG AATAGCAGTT TTAACCATGG GATGCNTTCA 
    ATCGGAACAA CATCTTGTCC GTGAAATCAA TCGAAATAAG ATCAACCTAT 
    GAAAACTAAC AAAAAAACTT CAATTTAGCT ACAAAAACTA AAGATTGAAT 
    TTTTTTAACA GAAAAGAGAG AAATTCAAAC CTCAGCTTTC TCACAAGCAT 
    AATCGAACGC GTTCTGATTC ATCGGCCTAA CAAGAATAAT ATCATAGCTC 
    TTTAGAATCG GATTCCCAGA AGTCAAACTC TGACACTGAG CATTATTCTC 
    CACATGAACA TGTAGGAGCT AAAATTAGCA AACACTACGT

AT2G02610.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G02640.1); Has 1583 Blast hits to 622 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1569; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02620.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G02610.1); Has 1447 Blast hits to 628 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1434; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42420.2

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G76670.1); Has 1011 Blast hits to 939 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 108; Fungi - 89; Plants - 690; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42430.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59980.1

Model type
Protein coding
Short Description
Polymerase/histidinol phosphatase-like
Computational Description
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59980.2

Model type
Protein coding
Short Description
Polymerase/histidinol phosphatase-like
Computational Description
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 1908 Blast hits to 1535 proteins in 339 species: Archae - 16; Bacteria - 381; Metazoa - 491; Fungi - 307; Plants - 100; Viruses - 13; Other Eukaryotes - 600 (source: NCBI BLink).
Link
InterPro Scan - TAIR