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Mutant Lines
53-2364-1

53-2364-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 5797657 [Map]; Strand: w
- AT5G17590.1 - [+] show detail - Putative membrane lipoprotein
  Distance: 0; Region: exon1 (CDS)

ATTGCACGTG CTTCTCACCT TCCCTCGGTG AATTCCTCGG CGCCGGATCC 
GAAGTTGTCG TGACTGTTTC CGGAGCCTTG TTAGGATCGC CTTTCTCCGG 
ATCGAAACTG GTAACGCTCT TGCTATTAAA GATGGTGCTC TGGCTAACAA 
AGATGACACA AGGTTTGAGG ACGCAGGAGT AAACGTAAGC CAAGAACCAA 
AAGAGCCAAG GGACACCAAC AAAGACCATA CCCGCTTGTA GAAACAGAGG 
GTTCGGATCA GAACGGACCA GGTAAAGTCC TAAAAGGACT CCTCCTATGA 
GGATAC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902074 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -192; Region: promoter
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -199; Region: promoter
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -199; Region: promoter
Flanking Genome Sequence: 53-2364-1 - 3-prime edge
```
GATAACGATG GTGCCTTCCT CCAAAGCCGT CATTTTTGCG AGGCAGATGG 
CGAAGCAGAT TCGTGTTACG ACGCCGTCGA TGTCCGCAAC ACGCTTTCTC 
TCAACGGGCC GACAATGGTC AAGTAGAAGA GCAGCAGAAC CCTCCAGAGC 
CCTTACCCAA CAGACCCTTG CGAGGGGAGA GATCTTCCAA CTCTCACAGA 
GAACCACCCG CTAGACAAGC CCACAACCTT GGAAAGAGTG ATACTACTCT 
GTCTGACTAT G
```

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR

AT5G17590.1

Model type: Protein coding
Short Description: Putative membrane lipoprotein
Computational Description: Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR