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Mutant Lines
53-2366-1

53-2366-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902127 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -139; Region: promoter
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -146; Region: promoter
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -146; Region: promoter
Flanking Genome Sequence: 53-2366-1 - 5-prime edge
```
GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAA CTGCCGCTGA TTCGAAAAGT TAGGGTTTTG 
CAGATTTTGA CGGAGAGAGA AGAAGGGGAG GGTTTTAGTC ACGCGAGAAG 
GATTGAGGGA TATAACAGTC ATTTACAGGG GTATAAGAAA GAAAGAAGGT 
CCTCACTCCT CCGTGTGGAT AAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902122 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -144; Region: promoter
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -151; Region: promoter
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -151; Region: promoter
Flanking Genome Sequence: 53-2366-1 - 3-prime edge
```
TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGA 
TAACGATGGT GCCTTCCTCC AAAGCCGTCA TTTTTGCGAG GCAGATGGCG 
AAGCAGATTC GTGTTACGAC GCCGTCGATG TCCGCAACAC GCTTTCTCTC 
AACGGGCGAC AATGGTCAAG TAGAAGAGCA GCAGAACCCT CCAGAGCCCT 
TACCCAACAG ACCCTTGCGA GGGGAGAGAT CTTCCAACTC TCACAGAGAA 
CCACCCGCTA GACAAGCCCA CAACCTTGGA AAGAGTGATA CTACTCTGTC 
TGACGATGGC TTCCTCGAAC AGTTCAAGCT ACCAGTCNGG NCCGTCAACN 
ACGCTGCCCG GTATN
```

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR