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53-2385-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24338598 [Map]; Strand: c
      • AT5G60540.1 - [+] show detail - pyridoxine biosynthesis 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G60548.1 - [+] show detail - conserved peptide upstream open reading frame 62
        Distance: -631; Region: promoter
      • AT5G60550.1 - [+] show detail - geminivirus rep interacting kinase 2
        Distance: -631; Region: promoter
    Flanking Genome Sequence: 53-2385-1 - 5-prime edge
    CTTTNAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CNGTCTGNTG NGGATCGGAG NCCNACGGCG
    CCGAGGATCN GGAANGCTNC TCNCCTTATN ACCGTTTCTT CTCTTATCAT
    TCCTGGCGGC GAGAGCACCA CCATGGCCAA ACTCGCCGAG TATCATAACN
    TTGGTCCGCT CCTCTCTCTC TAGAATCTAA AGTTATTGTT TGCGAGGACC
    CACTTGAAGA AACTAGTTAA AGGTTCCTTT TTTATGTGTG TTTTGACACG
    AATCTGGCGT TATTCACCAA AATTCTCCAG AATTTCAGTC AAAACGTCTC
    TTATACCTGA ATAATTCAGT TAGTACTGTT GAAAGTAATT AGCTTTGAGA
    TTGAAAATGA AGGAACTTTG GGATTAGTTA GCCTTCAAGT ACATGAAGTA
    ATGTTTTGTA TCTGAAACCT TTAAACATTG TGGACCAAAC TACTCGTTGA
    TCTTATGGAT GATATTTTCT GTCTTTAATG GAAGCTGTGA TAAGTGTAGG
    AAAGGGAGAG CTATCATTTA CTTTTATCTT TACCAAACTC CTTGTTTAGA
    TTTGGTTGTT TTTACAGTTT TAGTGGTGAG GACGAAGAAT AGTGTAAAAT
    GTCTCTTCTC TGTTCTAATT TTCTTTCATT TGTTGCTCTT TTGAAGTTTC
    CGGCTCTACG TGAGTTTGTT AAGATGGGGA AACCTGTTTG GGGGACATGC
    GCAGGTCTTA TATTCTTGGC AGACAGAGCA GT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24338639 [Map]; Strand: c
      • AT5G60540.1 - [+] show detail - pyridoxine biosynthesis 2
        Distance: 0; Region: exon1 (CDS)
      • AT5G60548.1 - [+] show detail - conserved peptide upstream open reading frame 62
        Distance: -590; Region: promoter
      • AT5G60550.1 - [+] show detail - geminivirus rep interacting kinase 2
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 53-2385-1 - 3-prime edge
    GCCGCAGAGC CGCGATGTGC TCATTGAAAG AACCTTGCAA AGCTAAAACT 
    CCGACGGTCA TTGCGGCGGC GACGGTCAAA GAAAGAGAGT GTCAGATATT
    ATTAAACACT AAAACTTTGT GAATGGAATT GGGACACTCA CAAAAGCCTT
    TTTGTAACAA CCATCGACGA TTTTGTTTTG TGTTTCTTTC TTTGCCCACG
    ATTTGGATTT CTATTCAGAT ATTTTCTTAT AATAACATTT TTAAATATAA
    AGATATCACG GTATTAATAA CTATTGTGAA CAAATTCAAT TAAAAAGCCA
    TAAACAATTA TGCTAACAAA ACAAAAATAT ACACTTATTA AGCTTTTATG
    TGATTATAAT TCAAATTCTC TAGGAAAAAT TGTAATCTAT TTTACAAAAT
    TTTAAAGATG ATGATATAAT ATTATATATA CACACAAAAA AAAACTTAT

AT5G60540.1

Model type
Protein coding
Short Description
pyridoxine biosynthesis 2
Curator Summary
Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.
Computational Description
pyridoxine biosynthesis 2 (PDX2); CONTAINS InterPro DOMAIN/s: PdxT/SNO family, conserved site (InterPro:IPR021196), SNO glutamine amidotransferase (InterPro:IPR002161); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60548.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 62
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF62 represents a conserved upstream opening reading frame relative to major ORF AT5G60550.1
Computational Description
conserved peptide upstream open reading frame 62 (CPuORF62); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60550.1

Model type
Protein coding
Short Description
geminivirus rep interacting kinase 2
Curator Summary
Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.
Computational Description
geminivirus rep interacting kinase 2 (GRIK2); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 1 (TAIR:AT3G45240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR