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53-2389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10150177 [Map]; Strand: w
      • AT2G23834.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1043; Region: intergenic
      • AT2G23840.1 - [+] show detail - HNH endonuclease
        Distance: 3620; Region: intergenic
    Flanking Genome Sequence: 53-2389-1 - 5-prime edge 
    ATTGCCACTG CTTTCACCCA ATTTCTGATA TGTTTTAACA ATATAAATNA 
    TTTTTCTTCT ATAAAAACTA AAATAATTTT GTATAATGTT GGTATAAATT 
    TAAAAAATAA AAACAAAATA AAATAACCTT AAAATCATAA AATAAAAAAT 
    CTGGAGAAAG ATCTAATTAT CCTCATCATC GTCATCTTAT AAAAGTCATC 
    ATCAAGATTC AAGATTCAAG ATGCCCTTCC ACAAAATTAT TTATCATATT 
    TTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10150061 [Map]; Strand: w
      • AT2G23834.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 927; Region: intergenic
      • AT2G23840.1 - [+] show detail - HNH endonuclease
        Distance: 3736; Region: intergenic
    Flanking Genome Sequence: 53-2389-1 - 3-prime edge 
    GTGGCAATCA TGTGTGGTAA CTCCGAAGAT CTTAGATCTA AGTGACGGTA 
    GGGCTAGCCA ACAATTTGGG ATAATAAAAG GTTTTGTTTT GTTATTTTTT 
    TTTTNCGGGN AATNGTTTNG TNNTTTTNGT NGTNNTNGGN ACCTNAAANC 
    NAAAAAAATT TNCNTNTTNA ATTNGTNNAA ATNGATTTTN TTNTNTNTAA 
    AAAAANNAAT NGGTNNAAGT NCNTNAAAAA GGGGANAAAA AANNGGNTTT 
    NANNNAAAAA NANGGAACCT CCNTNTTNGN CCTTACCAAA TNTAANCNTN 
    TTNGNGGTNA NCATTTTNNN TNGNCAAGTN NTTNGGTTNA ANGGAAAGGG 
    GAAATGGATT GNACCNTTNG TTTTTGTTNG TGGGANGNAA GNGGAANCNT 
    CCTAAAAANC NGNNACCNTT GAACCAGGGT TNNTNCAAAA NGGGGTTTTN 
    CNGNCANGGT TAGCCNTTNT NGAANGANCN TANNGGTNCN TNTTTTTTTN 
    NCTCCAATAG TTNNTTNTCC TAAATNGAAN NCAACCAGTT TAANCGTTGG 
    GANCATGGTT AAACTGGGTT GGACTGNAAN TNAACAAAAC AGGGTCANTC 
    AAGAAANNAA AATTTCACCC ANNCAATTTN TTTTTTCTTA ANATANTCAA 
    AAGGCNTTGA AATGANAAAA AAAATCCCCA AANTTTAANA AAACCAATTT 
    CCCCNTTTNA AAGNCNANCN NNNAGGGGCC

AT2G23834.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23840.1

Model type
Protein coding
Short Description
HNH endonuclease
Computational Description
HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 4176 Blast hits to 4176 proteins in 656 species: Archae - 6; Bacteria - 1679; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 29; Other Eukaryotes - 2425 (source: NCBI BLink).
Link
InterPro Scan - TAIR