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53-2397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24756609 [Map]; Strand: c
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon11 (3UTR)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon11 (3UTR)
    Flanking Genome Sequence: 53-2397-1 - 5-prime edge 
    CNTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTCATCAACG TTTGTGCGCA AGAATGGTAT 
    GACAAAACAA AAACCACAAC GATTCATGTT AATTGACGAA TTTAGCCGTA 
    TAAATTTAAG AACCTTTAAT TAATTTATTT AATTAGTTGT GATCTCCACT 
    CCTTGATTGC AGAAAGAAGA GAATGATTAG GAAGAAGAGA ATCACTAGGA 
    AAGGGCAAAT CCGTCATTGG AGATTTATGA TTCTTCTGAA GCCATTCCTT 
    AATCGCTCTC TTCTCATACG TATATCCATC CGAAGCAACA CATGGATTCT 
    CCATCACATC CTAATTTCAT CAATGACCCC ATAAACCAAA TCAAAACACA 
    TAACGTATCA AAAATCTGAC ATAAAATGTA AGATTTTCGT ATCATTCATT 
    ACCTTTGTTA TTGGACAGTA GAAATGGGTC GGAGCGTTAT GGTGATGATC 
    AATTAGGTTA TCAGCAAACA TGTCCCTTGC GATAGACGCA ACTTCCTTTA 
    ACCGTTCAAG AACCGGCAAA ATCTCTTTCC CTAAATCAGG ACGATCACGC 
    TTTCTCATCT CTGCACATCT AAGCCCTATC ATAACCATCT CTTTAGCTTC 
    CTTAACCGGC CAATCTCCAG CAGTTTTATC CAAGATCTCT GTAAATTTCC 
    CGGTTTGATC TCTCAACGCT TTCTCTATCG AATGAGCCAA ACCCATCGCG 
    GATCTAGCTG TGACTAGCTG AAGAAGTATG ATTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24756662 [Map]; Strand: c
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon11 (3UTR)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon11 (3UTR)
    Flanking Genome Sequence: 53-2397-1 - 3-prime edge 
    AATATTCGAG CTTTTGTGTG TAAATTTTTT TTACCTTATT TGTTTGATTG 
    TATTATAGGT TTTGACTGCA TATTTGCAAG AAGAATATAA TAGTGTTGAT 
    TTTTGTTGTG TCGTATTTTC TTATAAAAGT ATACATATCA ATACTAACGA 
    AAAACATATA TGAATCCAAT CCAATATGAA TATGAAAACT CTTCGTTTTT 
    TAAAAATCTT TTAGTTGTGT ATGATTTTAT TATCAAACAT GAGATAGTAT 
    CGTAAAAGTT GGCCTATCGT TTATACTACG AAGATACCCA TATCATTTAC 
    TATTTTGTAT TTTTGTTTGT TTCTCTAACA TCTATCGGTT TCTTAGTGAA 
    AAAAGTCTAA AATATTAAAA TGGTATGTTT TGTCATGTTG GATTTTGTTG 
    AATATATGCA ATTGTTAACT AGGTTAGTAA CTTAGTATAC ATGAGATGAG 
    ATCTGACACC TAGGCCATTA AATTGTGTGG GTTCTATATG ATATAGCTAT 
    GAAAGACATA AATATNGGTT ATAGAATAAT AAATGGGCTA GCCAAACGAA 
    TACTGAATTT ACAAAAATAA CATTTGAGCA TTGTTCACAC ATTCTATCAT 
    GCACTTATCT ACCTGGAATG ATAGAGTTTT CTTTTTCCTT TATCCTTTTT 
    TCATATAGTA TTAGTTACAA ACGAANAACC TTTACCAAGG GNAACAAATA 
    TACGTTAATA AGTTCGACTA TACGTCAATA TGAATA

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61560.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
Link
InterPro Scan - TAIR