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53-2407-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23497129 [Map]; Strand: w
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2407-1 - 3-prime edge 
    TTTGNNTGTT TCTAAGAATC CGTACCTGTC TTTTGTCTTC CAGGACAAGA 
    GCCTGCCGTT GNGGCCANAG GGGGCTTCTC GGGTCTTTTC CCTGAGTCAA 
    GCATCTCTGC AAACGACTTG GCTATTGGCA CCAGCTCGCC TGGCTTCACA 
    ATGTTGTGCA ACCTTCAGAT GACTAAGGAC GGTGTGGGCC TTTGCTTGTC 
    AGATATCAGA CTTGACAATG CAACCACCAT CTCCTCGGTC TTCCCCAAAG 
    CCCAGAAGAC CTACAAGGTC AACGGTCAGG ACCTCAAGGG CTGGTTTGTC 
    ATTGATTACG ATGCCGACAC CATATTCAAC AAAGTCACTC GTATGTCTTC 
    TTCTCTTTCA TTTCCTCCCT TCAATGCTCA CCACCACCAC CACACATTTT 
    CATGTTTTGT ATTATTGAGC AGTGGTCCAG AACATCTTC

AT5G58050.1

Model type
Protein coding
Short Description
SHV3-like 4
Computational Description
SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR