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53-2437-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11100729 [Map]; Strand: w
      • AT1G31100.1 - [+] show detail - transposable element gene
        Distance: -311; Region: promoter
    Flanking Genome Sequence: 53-2437-1 - 5-prime edge 
    ACCACCACAA CGTGGCGGAG TAGCCGCTCG GTCCCTTCGC CGATTCGAAA 
    GCCTTCAAGA AACACATCAA ACGTGGAATT TGGTTATCGT CACTATCACC 
    GTCTTCTCCT TGGTCGATGC TTCTTTTACG ATTCTTGCCA AAATTCTCCT 
    ATCTTCTGCC TCAATCTATC CCCAAAACAA AACTAAAATA TTAATGAAAA 
    TGCTCTAGTA ATATTTCAAT TTAAGACTAC TTCTCTAGGA CTACTATACT 
    TGCCTTAATA ATATAAAACT GGTTACATAT ATCACTAGTA TTTTTTTTCA 
    TGCATACACA TTTATAATAT ACTTTAAACT TGATTGATAT ACAACATGCT 
    TCCAATAATA TGATAAATGT GTAGATCATA AAGTTAGTTT ACAAACGGTA 
    TCAGTATTGT TAGAGCTTTG TTTGACTGTG TTTGTACCGA GGTTGTAACA 
    ATAATTATTA AGGGGTTTGG GGAGAACGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18569863 [Map]; Strand: c
      • AT5G45780.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -238; Region: promoter
    Flanking Genome Sequence: 53-2437-1 - 3-prime edge 
    AATGGAAGCG GGAAAATCCT CGAAGTTGTC AAACGATTGT TTCCTTGTCT 
    TCTGTTCTGT AAGACTTTTT TTTGTTTTTA TATCTGACTT TTGACAGTGT 
    TAGTGAGATT AGATCCTCTG TAATCGGTTC TACGAGAACA ATGGTNCAAC 
    AGCACACNTC TTGAATCTGA TTTGGTATTC CGATCAACGG CTTGATTTAT 
    CTTTATTTCA CCATTGAAAA AGTCAATAAT GCTCAAGACT AATGCTCGTA 
    TGAACGATAT TGGGTTAGTA ATAAGTTGGG TTAGTATGGA ATA

AT1G31100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G45780.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 3 (TAIR:AT1G60800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR