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Mutant Lines
53-2438-1

53-2438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 16891285 [Map]; Strand: w
- AT5G42242.1 - [+] show detail - low-molecular-weight cysteine-rich 57
  Distance: 0; Region: exon2 (CDS)

TATAATAACC AGCATAGTCG ACACAACCCC CTTTTCCATT CTTATATTTT 
ATAGCGCATT GTCTATCACA ACAACTTGTA GGACATTTAT CAGTGCACAT 
ATCAGTCGCA CCGATGCACA GTTTGGCTGG TTTAAATGAG GCACATCCGT 
AGGTGCATAT GCACGTCCCA TCCGGACCGT TACATTTGCT TACGGACGAT 
GGTCCGTGTT TGGCCTTGCA CCTTTGGTCG CAATTTTCAC AAGAGCTTAG 
GTTCTCGTCA CATGTCTGTG CTCTTATCTG ATTCACAACT GAAACAAACA 
TTATATACGT TAGTAAACTT AACTTAAAAA ATAAGATTAT TTGTGCCATA 
TTGATTGATA CAAAGTACAA GTAAATTTTG AATATAGCAA TGAGAGAATT 
TGTTTTTTAC ATGAGCCTAT ATATGTTAAT TCA

3 prime edge [+] show sequence

Chromosome: 5; Position: 16891169 [Map]; Strand: w
- AT5G42240.1 - [+] show detail - serine carboxypeptidase-like 42
  Distance: 0; Region: exon11 (3UTR)

TTATAGGATG TGCATTTGCG AGTACACTTG CTAAAACATA TTGACAAAAT 
TTGTAAAACA AATAATATGG TGATACAATT ATTGTTATTA CTAATTCAAT 
AACTAAGATA AATTCGATTC AATATAAACA TGACTAAAGA GAATTGTTGT 
CAACGTTTGA GATAACTAAA ACAAACTACA CTTGAAGATC CAACCAAACC 
ACAACACAAA CTTTTACATG TTTCTATCTC TACTAATCTA AGGCCTGAGA 
CAGATAAATT AAATACAAAA ACTACATTTT TCTTACAAAA GATATACCTC 
TGCTCTTTCA TTCATCAGTA GAAGAATGTG TGTTGTTGGG TAATCTCCGG 
CCACTTACAA AGCTACTGAA CAAATGTAGA GCTCGTGAGG GCTGTGCATA 
CGGTACCATA TGAGCAGCTC CTCTCACCGT TGCAAACGTC AGTAGTTTTC 
CATACTCTAT GGCCCAGCCT CCAACCTAGT CACATCCACA AGTTTGTAAT 
CAGTTTGAGA AACTTATGCA GGGGTAAAAA GTAAACTTGG CTTCTGCTGA

AT5G42240.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 42
Computational Description: serine carboxypeptidase-like 42 (scpl42); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 41 (TAIR:AT5G42230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G42242.1

Model type: Protein coding
Short Description: low-molecular-weight cysteine-rich 57
Curator Summary: Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description: low-molecular-weight cysteine-rich 57 (LCR57); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 58 (TAIR:AT5G38317.1); Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR