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53-2460-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18569737 [Map]; Strand: c
      • AT5G45780.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -112; Region: promoter
    Flanking Genome Sequence: 53-2460-1 - 5-prime edge 
    CTATAATCGT CAATTTCTTT ATTTGTCTTC TTCTTCTTCT TCATCTCGAT 
    TCAATTTAAT GCCAAAAAAA ACTTATCTTT TTAATGTATT TATAATGTTT 
    CAAATGGTCT GCCCTAGAAG AAAGGGCATA CAAATGATAA CTAACATTGA 
    AGTCTAGAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11100613 [Map]; Strand: w
      • AT1G31100.1 - [+] show detail - transposable element gene
        Distance: -195; Region: promoter
    Flanking Genome Sequence: 53-2460-1 - 3-prime edge 
    GTGGTGGTGT GTATGGACGA TAAAGCCTAC TCACGGTGCT TGGAAGTTTT 
    CCCCCGCCGT TGCTTCTTTC TGAGGACTAC CAGAGTTGAT TTCTCCAGCG 
    AGACGCAGTT CATGGCNGGC GGATTACCTC AAGATGATGT GGCGCCGGAC 
    CGAGTTCTTA GGTTCTCTGC TTAAGCTTGG ATATAACTTC CTCTTCACGG 
    TAGCTCTCTA AGCTTTGCAT GTTTAATTTA GGATGGACAT TTGGTTATTA 
    AAACTAGGTT AGTTTT

AT1G31100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G45780.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 3 (TAIR:AT1G60800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR