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Mutant Lines
53-2492-1

53-2492-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23497134 [Map]; Strand: c
- AT5G58050.1 - [+] show detail - SHV3-like 4
  Distance: 0; Region: exon3 (CDS)

GTTAAGACTT AAGATACCAT GTTGTTTGTT TGTTTCTAAG AATCCGTACC 
TGTCTTTTGT CTTCCAGGAC AAGAGCCTGC CGTTGTGGCC AGAGGGGGCT 
TCTCGGGTCT TTTCCCTGAG TCAAGCATCT CTGCAAACGA CTTGGCTATT 
GGCACCAGCT CGCCTGGCTT CACAATGTTG TGCAACCTTC AGATGACTAA 
GGACGGTGTG GGCCTTTGCT TGTCAGATAT CAGACTTGAC AATGCAACCA 
CCATCTCCTC GGTCTTCCCC AAAGCCCAGA AGACCTACAA GGTCAACGGT 
CAGGACCTCA AGGGCTGGTT TGTCATTGAT TACGATGCCG ACACCATATT 
CAACAAAGTC ACTCGTATGT CTTCTTCTT

3 prime edge [+] show sequence

Chromosome: 5; Position: 23497250 [Map]; Strand: c
- AT5G58050.1 - [+] show detail - SHV3-like 4
  Distance: 0; Region: intron2 (CDS)
- AT5G58060.1 - [+] show detail - SNARE-like superfamily protein
  Distance: -889; Region: promoter
- AT5G58060.2 - [+] show detail - SNARE-like superfamily protein
  Distance: -889; Region: promoter

GTCTTAACAT TAAACAACAA AAAACAACAA CAACATGGTA GTATGCAATA 
TGGGCATACT CTGTAAAAGG ATGCTTACCG TTAAGGGTAA GCCATTTCTT 
GGCAGGAACA GCTGCGGCAG CAGCAGGAGT CTTGGGTGCC GCAACACAAG 
AGTGTAAGAA AAGGGAGAAA AGAATGAAAA ACCTCAGCAT CTCTATCTGA 
TTGATCCTGC ATTTGTGTGT AACGTACGTA CCCCAATGGA AAAGCAAAGT 
CAGGATACAT GTAACAAAAA CAGAATTGTC ACATTTAAGA AAATTGTGAA 
AGAGAGATCT TACAGCGAGA AAAGAACATG AATCCCCTCT CCTGCTTGTT 
TTCCTCGTTT AGTTAGAGGA AAGGAAAAAG AAGAGAAAGA GGAGATGGGT 
CAAACAAGGT TAATTAATGG TAAAAAAAAG TAACTTGCTC TCATATCCTC 
CATTTATGGC CATTTACTCC TTTCTATTTT TATCTCTTC

AT5G58050.1

Model type: Protein coding
Short Description: SHV3-like 4
Computational Description: SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58060.1

Model type: Protein coding
Short Description: SNARE-like superfamily protein
Curator Summary: member of YKT6 Gene Family
Computational Description: YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58060.2

Model type: Protein coding
Short Description: SNARE-like superfamily protein
Curator Summary: member of YKT6 Gene Family
Computational Description: YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1363 Blast hits to 1363 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 253; Plants - 448; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
Link: InterPro Scan - TAIR