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53-2505-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212020 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2505-1 - 5-prime edge 
    TCCCTGAGAG TATCACTCTT GTCGATCCAC TTGTGAAAAA ATTCGGGACA 
    TTGGAGAAGC AGATCAAGAT TCAGACAAAT GGTAGTGTGT TTGTCAAGGG 
    ATTTGGCAGT ATCATCAGAA GGAATAAAGT GAAGACAACG GATAAGATGA 
    TATTTGAGAT CAAGAAGACT GGTGATAATA ACCTGGTTCA AACAATCAAG 
    ATTCACATTA TCAGTGGATG ATTATTTATA TCTCTCTCTC TCTCTCTCTC 
    TCCNTCTCTC TGTCTTTANT TACGTGTTTN GGAGTTNNAN CAANANTATT 
    GGGGTGTNNT GAANNAATGT AAGAGTNTNN ANTNTCTNAN ACTTANNANA 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212136 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-2505-1 - 3-prime edge 
    CTCAGGGAAG TGCAAGTCAT AGTCTTTGAT AACCCGAGCT GGGATGAGCT 
    GCTTTATGAA AAAAAACATC ATAAAAACTC ACAACCCAAC GATGTTAAAT 
    GAAAAGCTCT TTCACATTCA GTTTTTACCT TACCAGTTGG CTTTTCTTCT 
    TCGGATTAAG GATCAGAGTA AAAGATGGGT TCTCACGATC ATCCAGATAC 
    TGTCTTTCAT CTTCATCATC ATCATCAGCC TTAGCATGAT CTCTAGAATC 
    AAAAGCCTCA ACATAATCAT CATCTTCAAC AGGAACATCA TCAGCATCAT 
    TATCAACATC TTCATCATCA GCATCATTAT CATCTTTCTC GACAGCAGCT 
    TCATCAGCAT AATCATCACT ATCATTGTCT TCACCACAAT TATAATCAGA 
    ATCGTCATCA TCCTCATCAA GAGATAAAAC ATCATCACTG GCCTGATTTT 
    GTTCATCTCC

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR