1. Home
  2. Mutant Lines
  3. 53-2506-1

53-2506-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23814954 [Map]; Strand: w
      • AT5G58980.1 - [+] show detail - Neutral/alkaline non-lysosomal ceramidase
        Distance: -271; Region: promoter
      • AT5G58990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -39; Region: promoter
    Flanking Genome Sequence: 53-2506-1 - 5-prime edge 
    ATGCATACGT AACGGGGGTA TAATGTAATT TATAAAATTG TATTGGGTCT 
    GTTTGTGAAT AAACCAAAAC TTGTGGTTCT TCTCACTCGA C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23814876 [Map]; Strand: w
      • AT5G58980.1 - [+] show detail - Neutral/alkaline non-lysosomal ceramidase
        Distance: -193; Region: promoter
      • AT5G58990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -117; Region: promoter
    Flanking Genome Sequence: 53-2506-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAA 
    ACTAACTTTA CCCNAAAAAT CCAAACTTTG AAATTAGAAA TCGAATAAGA 
    AGTGAAAACC GAATTGAGAA GGACAGATAC AGCTAAAACA GCTGAAATTG 
    GGTAGCTTTC TTTCTCCGCA ACCTTAAAAA TAAGAACTTT CCTCACACTT 
    TTACTCTTAC TTACATACTC TTATCGTTGT TACCAGAAAA AAAAANCNAA 
    NCTTTNTNGN GTNTTNGNCT NTTNGAATTT CTNTNAACTT NTTTTTTTTN 
    GNTTNNCATN GTNNNCATNA ATTAGTTTNT NTNANCNCCA NCAAAGGGNT 
    AGGGGGTNCN TCANCTAAAA TCNTTANGGN TNGNGTTNCT TTTTTTTNNG 
    GNGGGATTNT NTTTGGGGTT NAANAATTTN AAATNCANNA AANATGGGGG 
    TTGGTTGGGG TGGCTNNCGT TGGTNTTNTT CTNTNGGANG GNCTAAAANN 
    GAAAAANAAT NGNTTNCNCC GTNTNGNGNG GNAAAATNAC AAGGGGGTNT 
    ATGTNTNTGC NCNGCNCATN GTTCTNGCTN TTTNNGTNGA GGATTAAATG 
    GGTNTTNTNA NATTCCNATT TTTTGATCGG NCTTGGANGC TNTGACATAN 
    CGGGACCTGC ANNTGATGTT AACATGANGG GATNTGCTAA CATGGAACAA 
    GTNNCNTNNG GGGTTNACTT TAGGCTNAAA GCTCGNGCGT TNATNGGGGN 
    TGGCCCTACA ANAAAAGGGT TGNTTTTGTA ATTT

AT5G58980.1

Model type
Protein coding
Short Description
Neutral/alkaline non-lysosomal ceramidase
Computational Description
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT1G07380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58990.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR