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53-2513-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22689401 [Map]; Strand: w
      • AT5G56030.1 - [+] show detail - heat shock protein 81-2
        Distance: 0; Region: exon3 (CDS)
      • AT5G56030.2 - [+] show detail - heat shock protein 81-2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2513-1 - 5-prime edge 
    GACTGAGCAT TGATGACGAT GATGCTGTTG AAGCCGATGC TGAGATGCCT 
    CCCCTTGAAG ACGATGCTGA TGCCGAAGGT AGCAAGATGG AGGAAGTCGA 
    CTAATTTATC ACACAAAAGT CGACTAAATT ATTAGCAGGT GTTATAAGAC 
    TATGGTTTTC TTTTTTTCTT TTCGTTAAAA CTTATGTTAT TTTGGTGATT 
    ATCTTCACGA ATTTTTTCTA TGGTTTTATT GTTGTGAAGA TATTTCTCTG 
    AACTAGGTTT TATGACAAAG ATTCTATTAT GCTCAAGAGA CTGATTCTTA 
    CATATCCAAG CTGAATTTTG TCAGGGTATT AGTAGTAACC TAGTTATGAT 
    TATATCTTCC TAATTAGAAT TTAGAATAAC AAATTATAAG AAAATAGAAT 
    AACACAGAGA TCATATCTTC TGGCATACAT ATCTTGCTGT GAATTATATT 
    GCATCCGAAT TAGAAAAGTT GCCACAGTTA AATTGAAATG TTTTCACTAA 
    AAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3972771 [Map]; Strand: w
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -7135; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 16078; Region: intergenic
    2. Chromosome: 4; Position: 3986202 [Map]; Strand: w
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -20566; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 2647; Region: intergenic
    Flanking Genome Sequence: 53-2513-1 - 3-prime edge 
    GCTCAGTCCA AGCTACCAGA CCNGGCCAGT AAGGCCNNGC NTGCNCTATN 
    GAGTCGAATA TGACTTGATG TCATGTGTAT GATTGAGTAT AAGAACTTAA 
    ACCGCAACCT TATCCTAAAA GCCTAAGTGG TATTTCCTTG TTAGAAGATA 
    CAAAGATAAA GACTCATATG GACTTCGGCT AAACCAACAA AGCT

AT4G06708.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.9e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06710.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G56030.1

Model type
Protein coding
Short Description
heat shock protein 81-2
Curator Summary
A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c.
Computational Description
heat shock protein 81-2 (HSP81-2); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: heat shock protein 81-3 (TAIR:AT5G56010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56030.2

Model type
Protein coding
Short Description
heat shock protein 81-2
Curator Summary
A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c.
Computational Description
heat shock protein 81-2 (HSP81-2); CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 81.4 (TAIR:AT5G56000.1).
Link
InterPro Scan - TAIR