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53-2545-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20174826 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: -5352; Region: intergenic
      • AT5G49680.2 - [+] show detail - Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
        Distance: -1559; Region: intergenic
    Flanking Genome Sequence: 53-2545-1 - 5-prime edge 
    GAGATTAGGG CGTAAGATCC GTCTACTGGG AGTGAGTCTT TCCTCCGTCC 
    AATTGGCATA AATATTGAAG ACAAAACATG AAATTTTTCA TCAAATTAGA 
    TAAACTATAA ATAGAAAAAG AGAATCAATG AATTTTTTGT TACAGTTTTT 
    AAATTTTATA AATTCACTAC TAGATTAGGT AATGGTTAGT GCCAAACAAT 
    GATCAAACTT TCAATTAAAG GCTTTTAACT TCAAAAAGTC ACATGATCCA 
    ATGGCAGTTA ATATAGATAA AAATATTAAA AGCTGGTCCG GATCTAGAGA 
    AATGTATGGC TTCAATCCGG AACTTTTTAA TTTTTTCTAA ATTCTTATTA 
    GCATTACTTC AGTTTTAACT TGATTCAATC ATTGTTGAGT TATTTTTCCC 
    GCAGAAATCC AGTGCTTAAA TTACATTCAT TAGCACTATC ATTCAATTAA 
    TAAAATATGA TATTGCGTTA AGCTTNCATA GNNGGCNAGN ANGCACGNNG 
    NNGGATTGAA ATTANAANAT NACTTNANGG CANNGNGCTN TAGAGTGNNA 
    NANNACNTGA NCCNNTACCA AATTNTANCN GCNGANANNT GCATNCNNGN 
    NGGATANNCN AAGCCCNAGC CGGATNANGN CTNTNNCTAC GCNTGANGCC 
    TCCNGGGANG GCNNNNAGCN CNGNNNNCNN NNANNCGNNN NNNNNANNNN 
    NANNAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20174714 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: -5240; Region: intergenic
      • AT5G49680.2 - [+] show detail - Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
        Distance: -1671; Region: intergenic
    Flanking Genome Sequence: 53-2545-1 - 3-prime edge 
    ATTAGTAATC TCTCTGATTA TTCCAACATA TAAAATTTTA TATTGACAAA 
    CAAATTCCAC CATTTGAAAG AACGTACAAT TCTTATCTGA ACAAGATTCA 
    TTAGTATCAT ACATAAATAT GAAACTAATA GATGAATGCA AGAACATTTC 
    GCAATGGCAT GTGCAACCAA GTCTACGAGC GTGCTCTAAT CAAAATTGAC 
    ATTTAACTAC CATCATTATC TCTTGATTAG CTACCATTGC TTTCTTGTAT 
    ATATGACTCT TATAATAATC ATTAACTTCG ATACATTAAT CTGAACGCTT 
    AGACTAATAA GAGTAGTAAT ATATCAATAA ACTTAAAAGG AGTTCCATTT 
    TCAACTGATG CAAAAACTTT AACTAGCGTG GTAGTCGATA TCTAGGTTGA 
    ATTTTACCAA AGAAATAATA TCTTTTGTGT ACAATATTTT TAAAGTTGAA 
    TGGCAGCAGA GTACAAGAAA AATGTTAGAA AATTCTACGT TAATTAGAAT 
    CTAGTAATCA AAAACACACA TAAGTTTCAA GTATAAAGCT ATATATTCTT 
    GAATTTAGTT TCATGATGAG TGGAAAGATG AATAACCATT AACCAACTAA 
    TGTCGAATTG TAATT

AT5G49665.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49680.2

Model type
Protein coding
Short Description
Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
Curator Summary
Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.
Computational Description
Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (TAIR:AT1G58250.1); Has 241 Blast hits to 185 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 36; Plants - 79; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR