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53-2549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: 53-2549-1 - 5-prime edge 
    GGTAGGAAAT GGACGTGAAA TGTTAAACTA CTAAAAATAA CATTTCTTCA 
    GACTATAGAA TGGATTTAGT GGATACTCGT AAAATCTCCC TACATTATCC 
    ATTAAAAAGA TATAAATTTT TTATGAAGAT TATGTTTTTC CTTTTGGAAA 
    ACAGATATTT AAAGACATTA ATATAAATTT ATTTACACTA GCTTTTTTCT 
    CCGCCATCCA TGAAATTTTG GTCTGCAACA ATTTTTTTTA TCCCGTTTAC 
    AAAAGGTATG CAAATTTAGA GTAAATTTTG NGATTCATTC CGATTAAACT 
    TCCTTCCTAT TAATCTGGAA ATTCTTCTCA GATACAAGGA AATGATTCAG 
    TTCCAGAGCC AAAGATCGTA GTTCTCGAAC AAGTAATCGA AAAGATTCCG 
    GAGCATCTTC TGGTTTAGGT ATTGTTCCTC CAATGATAGT GGTACCAAGT 
    ACTTCTTGGC GAGCTCTAAT ATGATCAGAT TTATAAGTAA GCATCTCTTG 
    TAAAATATGA GCAACACCAA ACCCCTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23351844 [Map]; Strand: c
      • AT5G57655.1 - [+] show detail - xylose isomerase family protein
        Distance: 1841; Region: intergenic
      • AT5G57660.1 - [+] show detail - CONSTANS-like 5
        Distance: -3620; Region: intergenic
    Flanking Genome Sequence: 53-2549-1 - 3-prime edge 
    GTCCTTTGGG TTATGATCTA CTCATCTACA TAATTCGTCA ATATTTTATT 
    GTTGACGCCA ATGGGATGAT GGAGGACGAC AGATTTAGAA TGAGAAGAAA 
    AAGAAACATT AGTTGAAAAT GAATATATTA CTCAATAATG CNGTTTTCGG 
    ACTAATAATC TAATACCACG ACCTTCCAAG TATCACACGT GCTACTCGAA 
    ATCAGAAGAT GCTTACACGT ATAGGAGTGT TTGCTGGATT GGCAAAGATC 
    AGATCACCCA CTTTCCTTTG AGGGAAAGTA TTACCTTTTA AGAAGATTGA 
    ATTTACAAAT TATTGCTTCG CTCAATCTCA TAATAGCTAG TTAAACAATG 
    TATCGTGTTG TGAATGATTA GGTCAACGTT CAATGTACAG TCTCTGGCTG 
    TTTCCATTTC GGTCGTGGCT TAAATATAGA GCTAGATGAT AAGTGTAATG 
    AAATACATAT TATTACGTAA GTTAAATAAA ATTTTTTACC GTTGATAAAT 
    AATCAGGCAT GTTTATAATA AGTACTATAA TACTTTGCCT AACTAACTCT 
    ATCT

AT5G57655.1

Model type
Protein coding
Short Description
xylose isomerase family protein
Computational Description
xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2369 Blast hits to 2369 proteins in 858 species: Archae - 2; Bacteria - 1867; Metazoa - 8; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57660.1

Model type
Protein coding
Short Description
CONSTANS-like 5
Computational Description
CONSTANS-like 5 (COL5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR