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Mutant Lines
53-2563-1

53-2563-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26422282 [Map]; Strand: w
  - AT5G66070.1 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT5G66070.2 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 53-2563-1 - 5-prime edge
```
AAGAAACAGA GAGCGGTTTC ATCAGAGGAG CCGCCGTTGG TGCTATCTCA 
GGCGCCGTCT TCTCCATCGA AGTCTTTGAA TCTTCCCTCC TCCTTTGGCA 
ATCCGATGAG TCTGGAATTG GATGCCTTCT CTACTTGGTA ACAATCTTCA 
TCTACCTCGA C
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26422165 [Map]; Strand: w
- AT5G66070.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (CDS)
- AT5G66070.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (CDS)

GTTTCTTGGC CGATCAAAGC CCCTGTCAAT GCTCCCAGCA AAGTCCCCAC 
TGAATCAAAT CAACAAACAA GTCAAATCAT ATTCATATCG TAATTGCAGA 
AACAAGGAAA ATTCCTCAGG GGATCACAGA GATTTTAATG AAGATGAATG 
TGAAGAAAAG AAGGAACCTA AAGCGAAGAA GAAGGTGAAG AGAGCGGAGA 
AGAGGTTGGC GAGAAGGGCA GAGACGGCGA AATGGAAGGA ATCTTTAATC 
CGGTGGAGGA CGGAGATGGG AGACAGAGAA TAATAACCAT CCATATCTGC 
AAAAGAGATG AAGAGGAGGA GGGAATGAAT TTGTGTT

AT5G66070.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66070.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 9487 Blast hits to 9461 proteins in 285 species: Archae - 0; Bacteria - 10; Metazoa - 2332; Fungi - 815; Plants - 5049; Viruses - 44; Other Eukaryotes - 1237 (source: NCBI BLink).
Link: InterPro Scan - TAIR