1. Home
  2. Mutant Lines
  3. 53-2566-1

53-2566-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26263569 [Map]; Strand: w
      • AT5G65683.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2566-1 - 5-prime edge 
    AGTTTAAGGA GTTTGGAGGT TGAGCTAAAT GAACTTAGCC GGATNTAACC 
    GAGAAATAGT ATATTAAACC GAACTGAAGA TAAACCGGAG CAGCTTACCC 
    CTACTTCGGC TTGGAGAGCC GCCGAGAAAT TAGCTAAAGT GGCTATTATG 
    AGGAAGCATT TAAATCGAGT CAGCGATATG CACGGCTTGG AAAACGCCAG 
    ATTTTAATTT TANTTTTCCC TTTTTTTCGA AAATTCGATT TCAATGATTT 
    TTGAATATAT AATGGTACAT AATTTATATA AGGAGGATAA GCAATAATTT 
    AGTAAGGTAT AAATAATAGA AGTATGATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26263453 [Map]; Strand: w
      • AT5G65683.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2566-1 - 3-prime edge 
    CTTAAACTAT CATCCGAATG AGACGCATTG GACCGAGCCG TCGTTAGAAC 
    CTGATACGCT CCGGATAAAT CCTCACGCTC GATAAGCCGG CGTGAATCCG 
    CTACAGCAGC AGGCACATGG AGTGTAAATT TCTCAGCCGT TCGATGCTTG 
    AAGATACATA TCTGACGGAT TGTGGCCGTG GGATCAAAAA TCGTTTTTCT 
    TTAGGACATG TCATTGGCTG ATGTGTCATT TGGTCAACGA TCGACGACTG 
    TACGGACATT ACTTGGTGGG AACCACTCGA CGAAGTCGGC ACTTTGAGCT 
    CAACGAGAAA CTCTCTCTCC TCCTCCGCAA ACAAATCTCC GACTTGGATG 
    ACAGAACCGG ATCCGAAATT CTCGAGTCGA CCGGTTAAAG AGTAAACCGA 
    TGAAATCTCA GTCAAATGAG ATCCGTTGAC CAAACTGAGA TTTAGCTTCA 
    CGTTATGGAG AGTCACGTTG AGCAACGAAG CGATTCTTTC GGTGAACGCG 
    TCTCGTAGCG GCGCGTGAAG CAACGCTCCA GGAGAAGCAA TGTAAACGGA 
    AT

AT5G65683.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR