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53-2592-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8180508 [Map]; Strand: c
      • AT5G24155.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2592-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAGTCGG GGATGATGGC TCTACTAGGT GGCATGAATC 
    CTCGTCCGCT CTCTCTCATA TATCATCTAT GTGCTATCAC TTTACATTCA 
    ATTGGCCATC TTCTATCTCC ATTTCCTTCC CCCCTTAGCA TTTGGCATAG 
    CCTCAGGCTT TTTGGTGTAA GTTATTTTAC CTTTCCTTCT ATTAAATTAT 
    TTCGATAGAA TACTTTTATT TTGACGCTCT TATTGGTTTA CTAATTACAA 
    TTTAACATTG ATTTTTTTTT CAATTGTATG TTTAATGTGA ATCACTAGTT 
    GGCTTTGAAA ATGTTGGTTC CCCATCTCAA GGCTGAGGGA GTTAGCGAAA 
    TGTTTTTTCC AGCAAACGCA GCCGCATATC GCAAAAGCTA TATGGCCGCA 
    TCTGGTCTTT AAACATTGAT GCTCTAAACA GCAACATACG TAAGCTACCA 
    NNCCGGGCCG NNGACCACGC TGCCCCCTAT AATNNGNGTT ATAATCCNNA 
    TGTNAAAAAC TNGACCTGCC CTGCCTATTA CAAAGCNGAT CATNNNGTTT 
    NCTNNANCCA NGANGCTNNN CNANGCNNTN TTNGGGANTN TGGCTACACA 
    NACAAACTTG GANNAANGGN NACAAGNNTN AAACAGNCNA GAAAAACGNT 
    GCNNAANGCN NNNNCANNNG NNNAAAGNNN NTCCNNGCGN NNACAANNGN 
    NNTTNNANAC CNNNNNACNC NGCNNAANAA NGGNNNNACA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8183713 [Map]; Strand: c
      • AT5G24160.1 - [+] show detail - squalene monoxygenase 6
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-2592-1 - 3-prime edge 
    ACCACTAGAG AGGTAATCAT AGCAACCTTG TCTCATTGCC TCTTTTGCTT 
    CGTCAGTTGA TGCAATTAGA ACTTGAGAAA ATGCATTTCC TAATGTGTTC 
    ACCGTCGCTG ACATTGGCCT TCACCATTTA AAAACATGTT TTCTTAATTA 
    TTTGAAGTTG TTAATATATA GGCTTAAATT AAAATTAAGA ATGTTCATAT 
    TTCAGCCATA AATGATTAGT ATGTGACGTA GGCTTACCTT GCGGATAATA 
    TTAAAGGACT TAATGACTTC TGAGACTTTG TTTGCATCAC CAAGGTTGCT 
    TAGTGGCTGG AGAAGACGAC GTAGAATGAG AATGTCAGAC AATAAAACCA 
    TCATTCCAGC CGCAACCGAA GGATGACGCA TGTTGAATGC ATCTCCCAAC 
    ACAATCACTC CATTTTTCTT GGTTAAAGAA GCTGTCATGC GCTTTGCTGG 
    CACCGCTTTT ATGTGTGCT

AT5G24155.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24160.1

Model type
Protein coding
Short Description
squalene monoxygenase 6
Computational Description
squalene monoxygenase 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR