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53-2594-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19888401 [Map]; Strand: c
      • AT5G49060.1 - [+] show detail - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-2594-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTCTACAGAG AATTGTTAGA CTCAACCTTT 
    ATTTTTTTTG AATCATAATG TGAGTATGGT GACAAGTACC TTGTTGTGAG 
    TAATTTCTTC TTTGTTGTTC TCAATATTCA CCTAGGAATT ATCATCTCCA 
    AATCTATATG AACCAAACAA AAGAGACTAT TGTTATCCTC CCTACACACA 
    TTACAGATTA TACTTGCAGC CCAAGAACCT CTGGAACATC CAAATCTGGC 
    AGGTCTCAGC GAATGTTGGA AAGTTCTGAG CTGGTATCAT ATCGGTATAT 
    GCCTGTTTTG TGTCAAACAA ACAAAGGACT AACATCAATG ATTGTTGTGT 
    GACCATAAGA AAATCTAGCA CTAGCATTTG TAATAAGTTA TGTATGGGTT 
    CCACGTTTTG TATGAGAGAT ATAGGTTCTA TGTGTAAGGC CCTGGNTANN 
    ANNTTAANCN GNCTNAAANC CCCCNTTNGN NAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19888401 [Map]; Strand: c
      • AT5G49060.1 - [+] show detail - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-2594-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    AGAAGATGTA GCAGATAACA ATTCTATTAC TTGTTTATAT GGCAACAAGT 
    CCTTTGATTT GTTTCAATCA GATCTCTTAA TGCTTTACGT TAGAACATTT 
    TGGTTCAAGA TTCTCGGTTC TTGGTCATAT ATTATTTCAA AAATTCAAAT 
    GCTATTGTTA CAGCTAGATT ATACACATGA ATCATGTGAA AAGTAAATAT 
    CAAATTCCAG TGTCTTAATA GAGGGTGAAA ATGAGCCCAA ACAACATTAC 
    AAAACCTGTG AAAAGCGGTC TTTGTGTTCA TTGAGAATGA ATTGAACTAA 
    TAACTCAGAA CCCTCCTGAG TTCTATCTTC AATGTTATAT TGTTTGCACA 
    TGCTAGCCTG GTCTGATATT TGTAGAGTCA GGTACGTCTA CAGGATATGA 
    GTCGATAAAG TCGAGCCATT TGTTTTCTGT GTTGGGCTCC ACTTTTCGGA 
    TGCATCTCCA CACCGCACTG TTACACTTTG AACCCACTTC CAAATGCAAT 
    CTGCAAGACC CTATCGCCTT TTTTCATTCT CCTTTTTGCT TCCAAGTAAG 
    AGAGAGCGTA CCAAATGGAT GACGAAGAAG TATTCCCAAA CCTATGAAGA 
    GTCATCTTTG ATGGCTCGAT GTCTACTTTT GTCAGTTTCA GGTTCATCTC 
    CATTGCTTGA ATTACAGCTC TTCCTCCTGT ATGAATGCAG AAATGCTCAA 
    ACGCTGTCTT GAAGTTTGGT GTATAAGAAG AATTACC

AT5G49060.1

Model type
Protein coding
Short Description
Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
Computational Description
FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink).
Link
InterPro Scan - TAIR