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53-2595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7712240 [Map]; Strand: w
      • AT2G17750.1 - [+] show detail - NEP-interacting protein 1
        Distance: -1089; Region: intergenic
      • AT2G17760.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -1074; Region: intergenic
    Flanking Genome Sequence: 53-2595-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCTTCAGATT CACATCTTTA ACAGTTTATA 
    TCACTCATGC CAAACAAAAA TCGCATCAAT CATATTTCTA TAAGTTTTAT 
    CAGTCTACCA AATAAACTCT ATTGATTTAA TATAATCTAT TAGAGCATCC 
    ACAACACAAG TTATTTTTTC ATCAAAAAAA AAAAGGTTNG GGGTNNGGGN 
    NCCTTNAAAA ANCCCAGNNT TTGGAGGGGC CTTNAGNCCN ANNCNTTNNN 
    NANAANNAGC CCCNGGNANT NGGGGTTNTT TNCCAGGNAA ANGNNNNCNA 
    CCTTNCNTTT TTNNGGGGNG NAANCNNNAA NTNNAAANNN TTTGGNTTNG 
    GGGNAAAATT AAAGGNTTTC CNTTNGGNTT TTNNGGCNTT TAAAAAANNC 
    CCNANTNANG GNNCTTTTNT TTTCNNGTTT AAAATTNCCC NTTNAAAAGN 
    CGGANGGNNC NNAACCCTTT NNGGGTTNAA AANGGNNANC NNANNTTTTG 
    NANGTTTTNG NANTNTTTTA AANCNNNNGN CCCCCCNNTN AAANCNCCAG 
    NNNAAGGTAA TTAAGNCAGN ACCCNCCCTT AATTTATNGG GCCANTTTGG 
    GTTTTGGGGG NAGGGGNGGG ACCTANTTCC GGCNTCGGGA AATNTNANCC 
    CTTTTTTTAN ANCAAANTCC CGTTTNAAAA ACCGANATNG CAAAAAGGNG 
    GGCCANCCNT CCCCCNCTTT TACCTAATNC NAGGCCCCCG GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7712235 [Map]; Strand: w
      • AT2G17750.1 - [+] show detail - NEP-interacting protein 1
        Distance: -1084; Region: intergenic
      • AT2G17760.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -1079; Region: intergenic
    Flanking Genome Sequence: 53-2595-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CATTACGATA CAATGCCACA ATTCGTAATT TACAATCAAT GAGCTTAAAA 
    ATCATGGATA AATGCAAAAT GAACAAGTTG AATGAAGCT

AT2G17750.1

Model type
Protein coding
Short Description
NEP-interacting protein 1
Curator Summary
Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
Computational Description
NEP-interacting protein 1 (NIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G19360.1); Has 746 Blast hits to 699 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 723; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G17760.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G35880.1); Has 2486 Blast hits to 2479 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 423; Plants - 1695; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR