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53-2613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25633151 [Map]; Strand: w
      • AT5G64050.1 - [+] show detail - glutamate tRNA synthetase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2613-1 - 5-prime edge
    CCGTAGACAA GGCTCGCCAT TTTCGTTTTC TTCGAAAGTT GAGATTTTTC 
    AGAGGATAAA AGGATTTGAT TAATCGGAAA GATGAAAGTC GCAAAGCAAA
    GCAACAAATT CGATTAAAGC CTCATAACNT GTTTTAATTG TAAAATTACA
    TCCCCATATT ATATTTTCAA CCTATTTACT CCCCAATTGA CAATTGTAAT
    GCTAAAATTC ACTTATTAGG AAAGACACGT GGACTATTTG AGGAACGACG
    TCGTCTTGTC GTCTGGTCTG GAAAGTAACA TTGTTCTAAA AGACCCCATA
    ACCTTTGTTA ATTTCTACTT ACATCCTCGT ACTATGTTTG CGAAGCAAAG
    TCAAAGTAAT TGTGGCATTG TATTTCCCCA AACGACGACG TTCGTTCACA
    TTCATCCTTA TAGCCTGTGA CTGAATTTTA ATGGCATTAT CATTGAAGCT
    AAGCTAAGAA TCCATGGTAT TACACTAGTT AAAGCGAAGG TCTTTGCCAC
    ATACATAAAT GATGATGAAA ATCTAAGACT ACAGACAACG CAGTTGCAGA
    AACATAACAT AGAAAGCTGG CTCCACTACT GGACGGTTTC AAGTTACTGA
    TTCATGGTTT TGTCTCTTCT TTCGTGCAGA CAGAGATGGC AACAATAGAA
    AACGTTCTGG CTAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25633035 [Map]; Strand: w
      • AT5G64050.1 - [+] show detail - glutamate tRNA synthetase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2613-1 - 3-prime edge
    GTCTACGGGA CGCCGTGGCT TAGGGTTAGA TCTTTACCGG AGCTTGCTCC 
    AGCTTTTCTC AGACGGCGTC AATCTTCTTT ATTTTACTGT TCTCGGCGAA
    GCTTCGCGGT GGTTGCAGTG TTCCACTCCA GTCAACAATG GTGGGTCTGT
    CAGAGTTCGT TTCGCGCCTT CTCCTACTGG TAATCTCCAT GTAGGTGGAG
    CAAGGACTGC TCTTTTCAAC TACTTGTTCG CGAGGTTTGT GATCTGATAT
    AGAGCAGAAC AATATTGAGA GTTTTTGGGG ATTGTAACTG ATGGAGTTTT
    TCTACAGGTC TAAAGGAGGG AAATTTGTGC TGAGAATTGA AGATACAGAT
    TTGGAGAGAT CAACACGTGA ATCTGAAGCA GCTGTTCTTC AGGATCTCTC
    ATGGCTTGGT CTTGATTGGG ATGAAGGTTG CTTTTTCTTC

AT5G64050.1

Model type
Protein coding
Short Description
glutamate tRNA synthetase
Curator Summary
Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.
Computational Description
glutamate tRNA synthetase (ERS); FUNCTIONS IN: protein binding, glutamate-tRNA ligase activity; INVOLVED IN: chloroplast organization, glutamyl-tRNA aminoacylation, mitochondrion organization, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial (InterPro:IPR004527), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Aminoacyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR008925), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 (InterPro:IPR020751); BEST Arabidopsis thaliana protein match is: Glutamyl/glutaminyl-tRNA synthetase, class Ic (TAIR:AT5G26710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR