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53-2632-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 870552 [Map]; Strand: c
      • AT4G01985.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -2426; Region: intergenic
      • AT4G01990.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 593; Region: intergenic
    Flanking Genome Sequence: 53-2632-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT GCTAACAAGA AGGAAATCGA TTGGACTTGG 
    AGCTCAGAGC TACTTTATTC ACTTTGAGAA GGCTAAAGAC GTAGATGGAG 
    CAGAAGAATT TTGCAAAAAT TTGTGGAAAT GGAGCAACNT GATTGCCTCT 
    AGAGCCAGCC TTTAGTCCAT TGTTATCTAA AAAATGCATT TCCGTCCCAA 
    AAGGGGAATA AACCCCCTAA AGAATTTCTA TTCTGCCATG ATTCGAAAAA 
    AAAAATTCTN TTCTGCCATC CAAAAAAAAN AATTTTTTTT NGATTNATTT 
    TTAAATCCCA AANCAGNGGG NNATTNCCAA ATANCCTTNT GTTTTNAAAT 
    TNTTTNTNTA NCCCANCCGC ANATCCNCGG GTNGAACCGG ATCCANCCTN 
    TTTTAAANGG ATTTTCCCCA AAATNAAAAT TTTTTANCCT AAGNAAAAAA 
    ATNGATTTNT NANTTCCGTG GTGAANTCCG TTCCNTCCGA ACNAAACGCN 
    TTCCGTTTCC GGNTATTTNA AAACCCTAAC ATCGTNTTTT TTTTTCNNTN 
    NNACNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 870596 [Map]; Strand: c
      • AT4G01985.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -2470; Region: intergenic
      • AT4G01990.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 549; Region: intergenic
    Flanking Genome Sequence: 53-2632-1 - 3-prime edge 
    CTTGTTAGTG CCTGGAAAAG ACAGTTCAAA CTTGATAAGA TAGGTTGCAT 
    TGCTAACTTG GTAACCCTGG CCTTCTGCAG CAAGTCCCAA ACTCGCTGAA 
    CCGCGGTATC ATCAGAAAGT TCAGCATATG AGCTATTGAG AAAACCATAG 
    CACTCAGATT TGGAAAACAA CGGCGTGTAG TTTTAGTGTG TAGTACTAAA 
    CCGTATGTTA TTATTGGGCC AACTTCATGT GTAACCTTAT TCGGGCCTTG 
    GGAACCTTGG GCCAACGTCA TGTGTTAACC TAGTTCGGGC CTTGAGAATC 
    TTGATTTCAA CTCTGTTAGT TGTTAAAGAT AGATGTTCTT GATTCCAACA 
    TTATCATGGA GTTTATATTG CCGAATTCAT GGTGAGCCTT CTTTTGATTT 
    GAGTCCCCCA AACTCAGATA AACGTCAGTA ACATTTGAGA TTCCAGCATA 
    TGAGCGAGCA ATTATGTTTG CAAAACTTCA TTGTTCTCGT ATATTTCTTA 
    TTCATTTCCA TGAAAACAGC TTTAGTTAGA ATGATTTTAG CGACCATCAC 
    ATAGATTCTC CTTCA

AT4G01985.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01990.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 4131 Blast hits to 2907 proteins in 125 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 28; Plants - 4015; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Link
InterPro Scan - TAIR