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53-2642-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26969702 [Map]; Strand: c
      • AT5G67630.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -308; Region: promoter
      • AT5G67640.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2642-1 - 5-prime edge 
    ATCAAGTTGT TGTCTCATTG TTGGTCCTGT GCAAATTACT CAAACGTTCT 
    CTTTTGTGTA TTAATTACAT TACGCAGTCT GACTCTTTAT TTTTTGTTTG 
    GTAGGACTAA TCGGTGACAA TGATAAGACG AGAAAAGTCA AGAAGAGAAG 
    AAATGCTAAG AAACTGGCCA AAGAGAGTTC TAATAATATC CAGGATGGAT 
    CCAATGCAAT CCCTGAAATT CCTAATTAGG GTTCAAATTA TCACAGACCT 
    TTATCTAAGA GTTAATTACT TCATCTTTAA TAATTCAAGG GTATATTACT 
    AAATTTATAA TTCTCGTCTA TAAGATTTGT GAGTTCCTTT TATGCCCTTG 
    TTAAGAGGAT TTAACTCTTA CATCGTCATT GCCATTGTGT AGCTTTTCTC 
    TAAACCCTAA AACCTTAACT TTGTTGCTCT TCTCCCTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26969826 [Map]; Strand: c
      • AT5G67630.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -432; Region: promoter
      • AT5G67640.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2642-1 - 3-prime edge 
    GAGCTAGTAG ATTTTGATTA AAGTCAAACC CTTGATCTGA ATACGTACAT 
    GTGTTATGAA ATCTAGTTAG ATAAAGTACG AATTTTTCCC AAAAGATTTG 
    AAACTAAGGA TATCAGTCAA AAAAGTCAAA AGCNTGTGTG TACCTTCTTT 
    CTTCTCTTGG GCATTTGGTC GAACAAGTTG TGAGCATATG TTGCTAATGC 
    TCCCATCAAC CTCTTCTTCG CCACCGTCAG AATCTTCTTC TTCAACATTG 
    CTCCCACAAG CATCTCCGAC ACTTCTTTCA TCATGGGTCT GAAGCATTTC 
    AGTCGGAAGT AAAGGTCCGA TGACTTTCTT CCGTCGAGCT GCTTCCTCTT 
    TGAGCATCTT CTTCCTTAAC CTCTTTCTTT TCCCTCGAC

AT5G67630.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67640.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR