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Mutant Lines
53-2702-1

53-2702-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 9823244 [Map]; Strand: w
- AT3G26730.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -441; Region: promoter

CCGGTAGGAG TATCGCAATT TCTGCATTAA CATTTACGTT TGCTAAGGGG 
TGGGCATTTT AACCGAACCG AACCGATCCG AACCAACCGA ACTCAAACCG 
ACCCAAACTA AACCCGGATT AACACTAAAA TTATTCGGTT AGGCTTCTTC 
TCAACCCAAA TAGTTCGGTT TAAAAACTTT CCTATCACGA CAATAAATTT 
TGTTTGGTGT TTACATAACC GAATTAATCG TACCGAATCC GAACTTAAAC 
CGAAATTCCC ACCGTTATAC CTGGCTATAC TGAAACTATA TATATACGTA 
TATATATATA TACATGCGAT GTTGACAAAT GAACACAAAA GTAGATAAAC 
TCAAACCGGT AGTTATTACA TTAACTGTGT AATAAAGATT CGGTATATCC 
CACCCGCGAA GAAAAGGAAT CATATCACGG GTTAACGAAT CCGGGTCGGG 
TACACGGAGC AATCATAAAG AAGAAACAAA AACTACGACG ACAACTTTTT 
TTNGGCCTNG GTTAAAAAAT TTTCATAAGT GAACACAGAA GA

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 9823128 [Map]; Strand: w
  - AT3G26720.1 - [+] show detail - Glycosyl hydrolase family 38 protein
    Distance: 0; Region: exon29 (3UTR)
  - AT3G26720.2 - [+] show detail - Glycosyl hydrolase family 38 protein
    Distance: 0; Region: exon29 (3UTR)
  - AT3G26730.1 - [+] show detail - RING/U-box superfamily protein
    Distance: -557; Region: promoter
Flanking Genome Sequence: 53-2702-1 - 3-prime edge
```
CCTACCGGGA TCGCACTCGT GACTGTTGCA ATCACCCGAA TTTTAAACTC 
GCATCAGACA CTAAATTCAA ACTTTTTTCT CTTCTCCGAT TAAACTTAAA 
AAGACAACAA CAACAGTGTA TTATTTCATA ACCTATGTTG CTGCTCTTTA 
TCACCAACCA TTTCAATTTG ATCATCAAAC TTGATCAACA AGGTTCGAAT 
TTCCATCGGA ACAAGCTCAA CCACTAGCTT CTCTGCGTCC ACCGCCTCTC 
CTCTCTTCAC TTCCTCCCCG GCCGAGCCTT CTACTTTCCA GATTAGCCGT 
CTCTTCTTCA TC
```

AT3G26720.1

Model type: Protein coding
Short Description: Glycosyl hydrolase family 38 protein
Computational Description: Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1103 Blast hits to 1053 proteins in 165 species: Archae - 7; Bacteria - 107; Metazoa - 691; Fungi - 10; Plants - 161; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G26720.2

Model type: Protein coding
Short Description: Glycosyl hydrolase family 38 protein
Computational Description: Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G26730.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 5292 Blast hits to 2238 proteins in 281 species: Archae - 3; Bacteria - 121; Metazoa - 1602; Fungi - 487; Plants - 437; Viruses - 6; Other Eukaryotes - 2636 (source: NCBI BLink).
Link: InterPro Scan - TAIR