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Mutant Lines
53-2724-1

53-2724-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23475996 [Map]; Strand: w
- AT5G57990.1 - [+] show detail - ubiquitin-specific protease 23
  Distance: -1892; Region: intergenic
- AT5G58000.1 - [+] show detail - Reticulon family protein
  Distance: -1415; Region: intergenic

AGTACAATCC ATGCTTGATA GTATAAATGT ATTGATATTC ATATATTACA 
AATTAAAATA TGTATGCTTG TACTATCTAT ATAAAGTTAC AGGATTGTGA 
CTTTTTCTTT TGGTGTAAAA CCGATTTATT ATCACCTGTT TTCTGCCACA 
AAAAGCTGTC GGTGGCACTC ACTTCACTAA TCCAGTGACA GTAAATTTTT 
ATAAAATAAG ATTATCTAAA TTAAAGTTAA AATAATAACA ATAACACNGT 
TAAATACCTT AAATTAGATC CATTTGTTCA TCTA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23475880 [Map]; Strand: w
  - AT5G57990.1 - [+] show detail - ubiquitin-specific protease 23
    Distance: -1776; Region: intergenic
  - AT5G58000.1 - [+] show detail - Reticulon family protein
    Distance: -1531; Region: intergenic
Flanking Genome Sequence: 53-2724-1 - 3-prime edge
```
ATTGTACTAG CAAACACTCA ATTAACGTTA AATGCATGCT TGGTGTGTTG 
GATAAACTAC CCTACCTAAT TAACAGCTAT AACAGGATC
```

AT5G57990.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 23
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58000.1

Model type: Protein coding
Short Description: Reticulon family protein
Computational Description: Reticulon family protein; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 1128 Blast hits to 1113 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 759; Fungi - 49; Plants - 88; Viruses - 4; Other Eukaryotes - 226 (source: NCBI BLink).
Link: InterPro Scan - TAIR