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53-2758-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22979336 [Map]; Strand: c
      • AT5G56830.1 - [+] show detail - transposable element gene
        Distance: 277; Region: intergenic
      • AT5G56840.1 - [+] show detail - myb-like transcription factor family protein
        Distance: -1357; Region: intergenic
    Flanking Genome Sequence: 53-2758-1 - 3-prime edge 
    ACTGATGTGT GCTGTTATTG TGGATGAAGA GCATTTGCAT AATGTTCTAA 
    TTTGGTAGTT TTTTTCCTTC AATAATATTT GATATAGTGA GCAACATCTT 
    TAGAATATGT TTAGTAAATT TTTGTAAAAC AAATTGACCT ACCTCACCAA 
    AAACAAACTT CATTGGACCA GAATTAAGTA GCCATTAGGA TCAAATCAAC 
    AATAATATAC TATTTATGTG ATGAAATATG AATCCCCATC ATTGTCCTAT 
    ATGAATCAAC ATTAATATAT TTTAATTAGT CGAATCTTAA AAATGAATCC 
    CAGTCATATT ATCTTTATGT ATGTAGAAGA AGATAGAATC AACATTAATA 
    GATTATTATA GTACATCAAC ATGAATACCC CATCTTGTCA TATTATATGT 
    ATGTGGGATA GAATCAACAT GAATCCACAT TCAGTATTCA AATTAGAAAA 
    TTATCGTAGG CTATGACTCT AAAGTTAATT TTAATTTATA TGATGAATGC 
    GAGTACCCCC ATTATAGATT CATACTATAC ATTATTTTAT ATGATCAAAT 
    ATGAATCATC ATCATTGTTC TCCA

AT5G56830.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.7e-14 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT5G56840.1

Model type
Protein coding
Short Description
myb-like transcription factor family protein
Computational Description
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1025 Blast hits to 1022 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 894; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR