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Mutant Lines
53-2802-1

53-2802-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 22331659 [Map]; Strand: w
- AT5G55040.2 - [+] show detail - DNA-binding bromodomain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
  Distance: 0; Region: exon1 (CDS)

CTTTGACCTC GCCGGAGCTC ATATCCCGAT TCACGCGGAG ATGAACTACT 
ACGCCGCGCC GCCAGATCTG CCTTCGACGG ACGACCTTTC CTCCGTCGTC 
TCGCGATCTG ACTCATCTTC TTCTTCTTCT TCTTCTCTAT CGAACTCAGT 
GCACAACACC CAATCCCTTT CTCTCTCTAT ACAGCTAAGG TCTCTCTCTC 
TCTCTCTGCA ACTTTCTATT TTTTTCCGGG TAGGAGAGAG AAAGGAAGAA 
AATGAAGAAA CTTTTGGTCA ACCGAAGCTA AGTCTGAACC TTAGGTTCGG 
ATATAATTTG ATGTATTCAA AAAAAACCTG CGCGATGGTA AACGCCGTCA 
ATTAGACGAC GTTAGCTACT ACTACCCGTT GCCCGGCTTA CTTAATTNTG 
TTATTTTTTT ATTAATTGTA TTTCCACGTC ATCAATTTCT TATTGAAGCT

3 prime edge [+] show sequence

Chromosome: 5; Position: 22856489 [Map]; Strand: c
- AT5G56440.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 0; Region: exon1 (CDS)

GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTGAG 
AGCGACAGTC TATGGCTATT AATCTCTGCA ATGAAGGAGC CGCGATTGTG 
AAATTTTTCA CGTTGTCATT TCGACGAATC AATATCAGTC CTTCAAGGAC 
AGGGCAACCG GATAAAAGTC TATTAACAAT CTCATCACTT GAGAATTTCG 
CAAATAAAAG GACCAGAACC TTGAGTGACC GGAAACAAAA CATGAAAGGA 
GCATCATCCA CAGTGAAATC TAGTAGGAGG TATAAGGACA CAAGGGTTTC 
ACATGTATAC AGGCTCCTAG GCAACCGTAT GGGCCCTGTA CTGGGTATGT 
ACCGGTAAAT ATGAAGATTG CGCACTCGAC GAGAAATCGC AACACTAATC 
CATGTTTCAA TATCTGAAGG AGGACAATTT CGACTAAGTG AGAGATGCAG 
AGTTTCCAAG ACTGGAGCTT CGTGAAGTAG CAAAAACTTG TCAACAAATC 
GTGAAGCTCT CCAATGCTCA GTGTCAACAA GAGATGGATC ACGATAATCA 
AGCT

AT5G55040.1

Model type: Protein coding
Short Description: DNA-binding bromodomain-containing protein
Computational Description: DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G55040.2

Model type: Protein coding
Short Description: DNA-binding bromodomain-containing protein
Computational Description: DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G56440.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56420.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR