Home
Mutant Lines
53-2818-1

53-2818-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24571107 [Map]; Strand: c
  - AT5G61060.2 - [+] show detail - histone deacetylase 5
    Distance: -116; Region: promoter
  - AT5G61060.1 - [+] show detail - histone deacetylase 5
    Distance: -41; Region: promoter
Flanking Genome Sequence: 53-2818-1 - 5-prime edge
```
AGAACCTTTT TGTGATTGTA AACCAACTGT GTCGTGTCAG ACTTTGATTG 
GTTGCGATAC TTGGTTTCCC AATTTCCCTC CAAAGAATCT CCAAATTGGT 
CAAACTCTCA AACCTAAAAA AAAAAAGGGG
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24571226 [Map]; Strand: c
- AT5G61060.2 - [+] show detail - histone deacetylase 5
  Distance: -235; Region: promoter
- AT5G61060.1 - [+] show detail - histone deacetylase 5
  Distance: -160; Region: promoter
- AT5G61070.1 - [+] show detail - histone deacetylase of the RPD3/HDA1 superfamily 18
  Distance: 0; Region: exon8 (3UTR)

TTTCTGTGGT TACAATGAAA CACCATTGTA CTTTCTAAGA AGGGTATATG 
TTGCTCTTCC CGAGCTTATC AACCATCTCG CGAAACTTGT GGTAGTCTTC 
TGCTACGGCC TCAAGCTCCC AACCTAAAGT ACCCTGGCTC TCTCACTGGC 
GATAAACNTT GATACACTCC ATATCTTTTA TGAACTTCTT GTGGGAACGC 
TCCATGTTTT TCTTGATGAC CTGAAACGGT TCAAGCTCTT CCGAGTCCAT 
GTCTTCATTG AACTCCGGAG ACAGAGGTTC GAGCTCGTCT AAGTCCATGT 
CTTCATAGAA CTCCTGAGAA AAGGCAAAAG ATCCATTCCC AACTCGGCTT 
CTTGACCTAT CCTCTTGGAG TTCCTTATCT ATGCGTTCAG CTTTTGCTAC 
GGCTTCATC

AT5G61060.1

Model type: Protein coding
Short Description: histone deacetylase 5
Curator Summary: Encodes a member of the histone deacetylase family.
Computational Description: histone deacetylase 5 (HDA05); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61060.2

Model type: Protein coding
Short Description: histone deacetylase 5
Curator Summary: Encodes a member of the histone deacetylase family.
Computational Description: histone deacetylase 5 (HDA05); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1).
Link: InterPro Scan - TAIR

AT5G61070.1

Model type: Protein coding
Short Description: histone deacetylase of the RPD3/HDA1 superfamily 18
Curator Summary: Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.
Computational Description: histone deacetylase of the RPD3/HDA1 superfamily 18 (HDA18); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR