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Mutant Lines
53-2824-1

53-2824-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 24196045 [Map]; Strand: w
- AT1G65120.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G65120.2 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon1 (5UTR)

TACTTTGATA ATAACAACAG AGATGAAGCA TTTATCACGT GTGATCCACG 
TAACAGAGTT GTTGAAGCTT TTATCACGTG AAATCCACGT GACAAGAGAA 
ACCCAAGTCG TCGTGTCTTC TTTTTCGAAC AGTTCTTCTT CGATATCTCC 
ATTGGGGAAT TCTGTCGAAC ATCTTGTGTG CATTCATTGT TTTGAGTAAA 
TTACACAACA GCTTCTATTT AATTTCACCA TCCAGAATAA ACAGAAAAAA 
GCACCCCAGA AATGTGTGAA TTAACAGATA AGACAAAAAA TTTGTGTGAA 
AGTTTTCGAA TTCGGGATCA AAGATGGTCA TGGGATGATC GAAATTGGTT 
TATGTTGTGT GAGAAGAATT AACAAAAACC TTAAGTCGTT AACAATTGTT 
TATATATTTT GTTGCAATTA TCTTATTAGT ACTTTATTAC TAAAATCAAG 
TAATGAACCA AAAGATTACA AACTTGAGTT CCATACTAAT ACATTTCTAT 
CATTGAACAG CTTCATAAAA AAGAACCTCT GAACGAATCT TCCTTTCTCC 
ACAAATTTTG ACCA

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 24176871 [Map]; Strand: w
  - AT1G65070.2 - [+] show detail - DNA mismatch repair protein MutS, type 2
    Distance: -561; Region: promoter
  - AT1G65070.1 - [+] show detail - DNA mismatch repair protein MutS, type 2
    Distance: -618; Region: promoter
  - AT1G65080.1 - [+] show detail - Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-2824-1 - 3-prime edge
```
ATAATCATCC ACCAAGGCAA TCCTGTGAAT TCATGAAAGC CTTCGAGAAA 
ATCAACGACG GCGAGAACAG GTAAAGAAGA AACATCGTTA GGGATGATTT 
CTTGAGACCC AATTGGGAAT TCTGGTCCAG AAGAGAGTAA TCGGCNGGAG 
AGGAGAGAAA CACGGCGGAG ATGGTGACGG CACGGGAGAG AAGAGAGGCG 
GAGAATGAGA GACGAAGGAG GAGGGTTTGA G
```

AT1G65070.1

Model type: Protein coding
Short Description: DNA mismatch repair protein MutS, type 2
Computational Description: DNA mismatch repair protein MutS, type 2; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 (TAIR:AT5G54090.1); Has 13239 Blast hits to 13226 proteins in 2712 species: Archae - 194; Bacteria - 9435; Metazoa - 644; Fungi - 752; Plants - 359; Viruses - 3; Other Eukaryotes - 1852 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G65070.2

Model type: Protein coding
Short Description: DNA mismatch repair protein MutS, type 2
Computational Description: DNA mismatch repair protein MutS, type 2; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 (TAIR:AT5G54090.1).
Link: InterPro Scan - TAIR

AT1G65080.1

Model type: Protein coding
Short Description: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain
Computational Description: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain; FUNCTIONS IN: binding; INVOLVED IN: protein insertion into membrane; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (TAIR:AT3G44370.1); Has 1367 Blast hits to 1362 proteins in 525 species: Archae - 4; Bacteria - 825; Metazoa - 205; Fungi - 148; Plants - 104; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G65120.1

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 468 Blast hits to 425 proteins in 93 species: Archae - 0; Bacteria - 32; Metazoa - 49; Fungi - 38; Plants - 218; Viruses - 8; Other Eukaryotes - 123 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G65120.2

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR