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53-2850-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23211683 [Map]; Strand: c
      • AT1G62690.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -294; Region: promoter
      • AT1G62695.1 - [+] show detail - transposable element gene
        Distance: -62; Region: promoter
    Flanking Genome Sequence: 53-2850-1 - 5-prime edge 
    ATAACCCAAA ATCTCTTCAG GGTTTTTTTA TAGTAAAGTT TATTAATCAT 
    CAGTACTACT TAAATAAATT AAGTCACGGG TTATAGAAAA ACGTTAGTTT 
    GATATTAGCA AGACTAACAA ATTTATTTAA TGTATATGAC AAATAATCAA 
    GGACTCAACA ATGCAAGTCA TTTGTTTGAT CATATAATTT GGCGCATGAT 
    ATCATGGATA TAATCGTATA AATCATTTTC ATAATGTACT ACGTACAGTA 
    TCCCTAAATA AATATTCTCT GATGGGCCTT ATTGCTAAAC AATTGGGCTT 
    AGAAAAAGCG TATAAAAGTA ACGATTTTAT CTTAATTCAT GCTTCAGCTT 
    CACTTGCCCC GCTTTATCAG AAAGAAACCC TCATAGAGCA AATCTGAGGT 
    AAATTGGTTC TCTCTGTTCC TCCTGTACGA CTTTTCTCCA TTGGTAACGG 
    TTTTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23274430 [Map]; Strand: w
      • AT1G62850.2 - [+] show detail - Class I peptide chain release factor
        Distance: -165; Region: promoter
      • AT1G62850.3 - [+] show detail - Class I peptide chain release factor
        Distance: -128; Region: promoter
    Flanking Genome Sequence: 53-2850-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTTGC 
    GTTGATGCGA ACCGGAAATT ATGAACCGGA AAATCGCGTT TGAATTTTGA 
    CTGAACCGGA TCGTTTTAAA GAGATAAACC AAGAAAATGT TACGGTTTTT 
    TTACTAACCG TAAACCGGAA ATTGGGAGCC ACGCAAAATT AGGGTCGCCT 
    TCTTCTTCTT CTTCTCTGAC ATCGTCATTT TGACATCGGA AGAATCTTCA 
    GTGCCGAGAA AGATAAACAA AATGGCGGCA ATCAGAACGA TGACGAACAT 
    GATTCTACGC GAGTTCATCC ATCATCCACT TCTCCTTCAC TCTTCATCGA 
    AATCGTGTCA ATCTCTTTTA CCATGTCTCC GTCTCACTCC CCTAATTTCT 
    CCAATTCACT CTAATTCCCG GCTCGTATCC GTCCGATGTG CGGCATCGAC 
    CTCCGGTGGA AGCGGTGGTG ATCGGAAAGT CTCTTCACGG TTGTCGCAGG 
    TGCAACAGAT GCTTCATGAA GCCGAAGAGA GAGCTAGTTC CGCTGGCAAT 
    GAGCCTACTC CTCAAATCAC TCTAGGCAAG CT

AT1G62690.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62695.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to Unknown protein, blastp match of 30% identity and 1.6e-09 P-value to GP|22773232|gb|AAN06838.1||AC099401 Unknown protein {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT1G62850.2

Model type
Protein coding
Short Description
Class I peptide chain release factor
Computational Description
Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62850.3

Model type
Protein coding
Short Description
Class I peptide chain release factor
Computational Description
Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR