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53-2862-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24342457 [Map]; Strand: c
      • AT5G60548.1 - [+] show detail - conserved peptide upstream open reading frame 62
        Distance: 0; Region: exon13 (3UTR)
      • AT5G60550.1 - [+] show detail - geminivirus rep interacting kinase 2
        Distance: 0; Region: exon13 (3UTR)
      • AT5G60553.1 - [+] show detail - Defensin-like (DEFL) family protein
        Distance: -748; Region: promoter
    Flanking Genome Sequence: 53-2862-1 - 3-prime edge 
    TTATAGATGC ATCTACTTAA CCGTACAAGT TTGACCTCGC TTGGGGTCAT 
    TGTTTTTCTT TTTATTTAAT TCTAGATCAT TTTCATGTTA TTGTCCATTG 
    TTTATAAATT TCAGAAACAA AATGATTTTG ATTCTGACTT TGATATTTTA 
    TTTTTTACAA AGGGCTCGAT ATCTCTTTCA AGTTTCAACC CAATGAGCTC 
    TCCCACATGG TTGACTAGTA AATTACTTAG ACTAAGATAT TGTTTTACTG 
    TTGTTCCAAA AAAAAAAAAA AAA

AT5G60548.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 62
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF62 represents a conserved upstream opening reading frame relative to major ORF AT5G60550.1
Computational Description
conserved peptide upstream open reading frame 62 (CPuORF62); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60550.1

Model type
Protein coding
Short Description
geminivirus rep interacting kinase 2
Curator Summary
Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.
Computational Description
geminivirus rep interacting kinase 2 (GRIK2); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 1 (TAIR:AT3G45240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60553.1

Model type
Protein coding
Short Description
Defensin-like (DEFL) family protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT5G51845.1); Has 17 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR