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53-2866-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25390165 [Map]; Strand: c
      • AT5G63380.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: -102; Region: promoter
    Flanking Genome Sequence: 53-2866-1 - 5-prime edge 
    CTTGACAGCC TTTTTAGNGA TTNCAGTTCA GGANNTTTGT NAACAAAAAN 
    CAATATAATA AAATCGATTT GCCGTTAAAA AAAAAAAAAA ACCANNNGGG 
    GTTNNGGGNN GGCCCCCGTT GNCTTNATTT NTGGGGNGTT ANTTTTTTTN 
    GGNGGGGGCC CATNTTTCCC CCCCGCNAAA AAAAAACCGG GTTNNTTNAA 
    GGGGTTCCNA ANGGGGGGGN AAAACNNANC NCCCCCCTTT TATTNACNGG 
    GACCCNCCGG TTTTTATTAA NGGGNNGGNA AATTTTNCAG GGTTTGGGCC 
    CNTTTTTTTT TTTTNNCCCC NTAAAAAAAA AACCCCCNTC CCCGCCCNGG 
    NAAAAAAAAA ACCGGGGGGG GGGGAAAAAC CCGGNGCNCC TTNNANAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25390277 [Map]; Strand: c
      • AT5G63380.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: -214; Region: promoter
    Flanking Genome Sequence: 53-2866-1 - 3-prime edge 
    GTGCTGTCAA GTATCAACGT TCTTTCGTCA AAGATCTGTG GGCCATAAAT 
    CTTTTTACAC AGTGTCTCAT TCTTATTAGT TAGAGCTCAG TGATTTGTAC 
    GAATGATGAA ATTTTGTACG CAAAACATGG AAAGGAATCT GTACATTTAC 
    AGTAGATTTA TATGTACACG TGTCTAACGC CGATTGGNTG CAGCGTGGAC 
    TAGNATTGCT TTGAGGAGCA AGG

AT5G63380.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.
Computational Description
AMP-dependent synthetase and ligase family protein; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 81844 Blast hits to 74712 proteins in 3773 species: Archae - 1219; Bacteria - 53606; Metazoa - 3425; Fungi - 4605; Plants - 2698; Viruses - 1; Other Eukaryotes - 16290 (source: NCBI BLink).
Link
InterPro Scan - TAIR