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53-2880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2339942 [Map]; Strand: w
      • AT3G07330.1 - [+] show detail - Cellulose-synthase-like C6
        Distance: -842; Region: promoter
    Flanking Genome Sequence: 53-2880-1 - 5-prime edge 
    GTCAGGACCA ATGTATTTGC AATTTTTTCG AGTATCCGGC CGGTCTGCGG 
    TATAATTGTT TATGATCATG TAAGATATTA TCAACAACTT GAGATAGATG 
    GTTTTTGATT AGACATTAAT TTTTGCTTGA TTGATAACCT TGTTGCGGGT 
    TCTCTTTGCT ATAGTAGGTA AATAGAAAGA GACGCTTCTC TGTTCTATAT 
    AGTTTCCATC AATCACGGCG TGATCCCTAC ATCATAATCC TAATTAATCA 
    AATTTGGTTT TTTGCTCATA ACCACTCATA TTAGACTTTC TAATGTATCT 
    TTGTTTTCTG AATAACTCCC ACAAAGACAA TGGAGAAAAT GACAGAACAC 
    CTTACACAGC TGGTTAACAC TAGCAACGAT CAAATCATAT ATCAAATATG 
    ATCTAACATT GAAACTGACG TTAACGAGTT ATTAAGACTT GAGAGTGTAT 
    ATTGAAAAAG TCAAGCTTAG CTAAGATTTG ATGTTTGTGA ATATGCTGTA 
    GTACCTATTA TATTTGTTGG AAATAGTACA TTTGAGCAAA TTACACACAT 
    GTTATTTAGC AC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2339796 [Map]; Strand: w
      • AT3G07330.1 - [+] show detail - Cellulose-synthase-like C6
        Distance: -696; Region: promoter
    Flanking Genome Sequence: 53-2880-1 - 3-prime edge 
    GTCCTGACGG GGTTGAGTGG ATCACATACT TATCTTCTTC TGCGTTGGTC 
    GTTTAATCCT GCTTGAAAAA ATATTCGTTA GAATGGGCCA CACAATCAAT 
    ACGCACTGTG AAAGCTAAAT TTACGAATCT TAAATATGCT ATGGGCTAGT 
    TCTAAAACTT TTTAATCTGT AGAATTTTAG TGGGCTCTTT GTGTGGTGCT 
    TTATTTGTCG GCCCAACTAA ACACACGCTA ACAATTCTTT TTTTTTCCTC 
    TCACATTTTT TTTTTTAAAA AANAAAAAAA AAA

AT3G07330.1

Model type
Protein coding
Short Description
Cellulose-synthase-like C6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
Cellulose-synthase-like C6 (CSLC6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen tube development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 4986 Blast hits to 4983 proteins in 1463 species: Archae - 182; Bacteria - 3875; Metazoa - 9; Fungi - 97; Plants - 510; Viruses - 14; Other Eukaryotes - 299 (source: NCBI BLink).
Link
InterPro Scan - TAIR