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Mutant Lines
53-2898-1

53-2898-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 12091222 [Map]; Strand: c
  - AT1G33350.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G33360.1 - [+] show detail - ATP-dependent Clp protease
    Distance: -655; Region: promoter
Flanking Genome Sequence: 53-2898-1 - 5-prime edge
```
TTCTTAAGTC TACACCATAT CTCTCCTCTG CTTTTTCAAC TCCTTTGGTG 
CATACCCATT TGTTTAAATC TGGGTTTCAT CTCTATGTNG TTGTTCAAAC 
TGCTCTTCTT CACTCCTACG CTTCCTCTGT TTCTCATATA ACTCTTGCAA 
GACAACNTGT TCGACGAAAT GTCTGAGAGA AATGTNGTTT CTTGG
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 12091338 [Map]; Strand: c
- AT1G33350.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT1G33360.1 - [+] show detail - ATP-dependent Clp protease
  Distance: -539; Region: promoter

CTTAAGAACA AGTGGGTAGA TAAAGTGATT AGGCCGAGGA ACAGAACGAT 
TAACCATGAG ACGAAAGAAG GAGAAAGCTG AAGAAGCATG AAGAGGAAGA 
GAAGAAGAGT AAGCAGTTAA AACGGCAGCG TAAAGATGCG TATTGGGGAA 
AGAGAAACGA TCAAAGATAA AGCGAGCGTA AGAGAGATTA CAGAGACGAA 
GCGTACAAAA ACGAAGAAGC TTAAAACAGA GGAAATGTGA ATGACTTAGT 
CCAGAAACTA TCATAAAGGA CTGAACTTGC TTCAAATGAT TCAAATATCT 
CGACTTTGAT ATCACTGCGG AGATGAATTG ATTCAGTAAC TGCTCCGCCA 
TGTGTGACGA CGGCGCGTGG AGGTAAGAGA ATTGTGTTAC ACGTGTCCCC 
ATGTGCTCTT CTTCCACCAA ACGTGAAGAG AGAGAGAGAG AGAGAGAGAG 
AGAGAGAGAG AGAGAG

AT1G33350.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 34946 Blast hits to 13536 proteins in 257 species: Archae - 4; Bacteria - 29; Metazoa - 79; Fungi - 56; Plants - 34238; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G33360.1

Model type: Protein coding
Short Description: ATP-dependent Clp protease
Curator Summary: Encodes ClpX3, a subunit of the Clp protease complex.
Computational Description: ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLP protease regulatory subunit X (TAIR:AT5G53350.1); Has 27211 Blast hits to 23373 proteins in 3012 species: Archae - 715; Bacteria - 14972; Metazoa - 1896; Fungi - 1201; Plants - 919; Viruses - 6; Other Eukaryotes - 7502 (source: NCBI BLink).
Link: InterPro Scan - TAIR